Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0489 ATGCAGGTGGGGAAGGCTTTGGTTGATGGGCAACTGCTGGATGTTTACTTTACCCCCGACCTCTACAAGCATATACTGGGTGTTAAGGTTACATGCCATGATATTGAAGCGGTTGATCCTGATTACTATATGAATTTGAAATGGATGTTGGAGATTTCGTTGGAGGGCTTTAAGGCGTTACAGGGCATCTCTGGTCTGCAAAGGTTTCAGATTCACAAGGCATATGTAGCACCTAATCGTCTGCCATCAGCTCATACTTGGTAA 264 0.447 MQVGKALVDGQLLDVYFTPDLYKHILGVKVTCHDIEAVDPDYYMNLKWMLEISLEGFKALQGISGLQRFQIHKAYVAPNRLPSAHTW* 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0489 87 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UPL2-LIKE ISOFORM X1 52 86 - -
Pvu10g0489 87 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UPL2-LIKE ISOFORM X1 3 51 - -
Pvu10g0489 87 ProSiteProfiles HECT domain profile. 1 51 IPR000569 GO:0004842
Pvu10g0489 87 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 3 51 - -
Pvu10g0489 87 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 52 86 - -
Pvu10g0489 87 Gene3D Hect, E3 ligase catalytic domain 29 56 - -
Pvu10g0489 87 SUPERFAMILY Hect, E3 ligase catalytic domain 3 55 IPR035983 GO:0004842
Pvu10g0489 87 Gene3D Hect, E3 ligase catalytic domains 3 28 - -
Pvu10g0489 87 Pfam HECT-domain (ubiquitin-transferase) 3 53 IPR000569 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0489 Pvu-Chr10 7242032 7243138 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0489 - - pvu:PHAVU_010G047100g 184.111