Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10185 ATGGCTGCGCTCCTTTTGTTTGTGTTTGTGTTTGCTGGTCAGCTAATTGCTGGATTTAACACACAGCTACCACCTCCACCCAATGGAGACTCAATAACAATTCTCAGCATTGACGGAGGTGGCATCAGGGGGATTGTTCCAGCAGTTGTTCTTCACTACTTGGAAATGGCTCTTAAGGCGAAGGATGAAAATGCATCACTAGCAAAATATTTTGATGTGATAGCAGGAACTAGCACCGGAGGACTTATGACCGCTATGCTCACCACTCCAAACCCAAATGACCCTACTACTCCTCTCTTTACTCCCGGGGAAATCGTTGACTTCTACAAGGATTACGGTCCCTATATATTCAACAAAACTAGTGGGTGGAATACTACATACCCGGGTCCCAAGTATGATGGCAAGTTCTTACATAATATAATAGACGAGTTATTGAAAGATACACGGCTGAATCAGACATTGACGAATGTTGTTATCCCAACCTTTGACCTCAAGAAATTGCATCCAGTTATATTCTCAAACTTTAAGCTGAAGACAGTTCCAAGCCTAAATGCTAAACTGTCAGATATATGCATTGGGACTTCAGCTGCACCAACGTATCTACCACCCTATTACTTTGAGAATGATGGTATTCAATTCAATTTGGTTGATGGTGGTGTGGCCGCAACTAATCCGGCGATGGCTGCTGTGAGTGAAGTGATACAACAAGAAGAGAAGGAGTATAGCAAAATCATGTTGTTGTCTATAGGATGTGGAAGTAGTAACACTACAGGGTATGATGCTGAAATTGCAGTTAACTTTACAGCAGCATTTTGGATGGCATCAGGACTTGCAGTTGGTGCTTATGACACTGCTGCCACAGACATGACTCATAATTACCTTGCCACAGACCTCCACTCTTCCGACACCTACCTTCGAATTCAGGAATATAACTTGGATCCATCCATGGCTTCTCTTGATAATGTTACCGAAGTAAACCTGGAAAATCTTGTAAAGGTAGGACAGAACCTGCTGGAACAACCGGTTTTCAGCATTAATGTAACTACTTTTGTCCCAGAGCAAGAAACAATTTATGCTACAAATGCTGAGGCTCTTGAAAGGTTTGCTGATATGCTGTACGAGGAGAAGCAGCTGCGTCTGAGAAAGAAATCGATGGAAAAAAGGGGACGACCATTTATTGAAACTGTTACAATGCCTTTCAGCCGAACTCCAACAACTTAG 1221 0.4267 MAALLLFVFVFAGQLIAGFNTQLPPPPNGDSITILSIDGGGIRGIVPAVVLHYLEMALKAKDENASLAKYFDVIAGTSTGGLMTAMLTTPNPNDPTTPLFTPGEIVDFYKDYGPYIFNKTSGWNTTYPGPKYDGKFLHNIIDELLKDTRLNQTLTNVVIPTFDLKKLHPVIFSNFKLKTVPSLNAKLSDICIGTSAAPTYLPPYYFENDGIQFNLVDGGVAATNPAMAAVSEVIQQEEKEYSKIMLLSIGCGSSNTTGYDAEIAVNFTAAFWMASGLAVGAYDTAATDMTHNYLATDLHSSDTYLRIQEYNLDPSMASLDNVTEVNLENLVKVGQNLLEQPVFSINVTTFVPEQETIYATNAEALERFADMLYEEKQLRLRKKSMEKRGRPFIETVTMPFSRTPTT. 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10185 406 FunFam Patatin 25 385 - -
Seca4g10185 406 Gene3D Cytosolic phospholipase A2 catalytic domain 26 385 - -
Seca4g10185 406 Pfam Patatin-like phospholipase 35 229 IPR002641 GO:0006629
Seca4g10185 406 SUPERFAMILY FabD/lysophospholipase-like 32 352 IPR016035 -
Seca4g10185 406 ProSiteProfiles Patatin-like phospholipase (PNPLA) domain profile. 35 230 IPR002641 GO:0006629
Seca4g10185 406 PANTHER XYLOSE ISOMERASE 21 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10185 Seca-Chr4 236155789 236160863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10185 23 379 Miscellaneous Gene Families AT2G26560 43.041 6.04e-91 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10185 - - gmx:100802114 572.392