Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00169 ATGGCTCATTTTGTTTTCTTTGTTTTGTTGTTTGCTGGGCAAGTGATTGGTGGATTCAGTACCCAGAAACTGCCTCCATCTGACAATGGAAACACATTAACTATTCTGAGCATTGATGGTGGTGGTATCAGAGGGATTATTCCAGCAACAGTTCTTGATTACTTAGATCAGGCTCTTAAGGCTAGGGATCCAAATGCAGATTTAGCACATTTCTTTGATGTGATAGGAGGGAGTGGCACTGGTGCACTCATAACAGCTATGTTAGCCACCCCAAGCCCTCATGATCCTACTCGTGCTGCCTTTACTCCTGCACAAATTGTAGAATTCTACAAACAAAATGGCCCTCATGTATTCAATTCATCTAGACCTGGAAACGGTCCCCAATTCGATGGGAAGTTTTTACATGACATAACTCGTGAACTGTTGAAGGATACACGACTTAGTCAAACATTGACCAATGTTGTCATCCCAACTTTCGACATCAAGACACAAAAGCCGGTTATATTCTCAAACTACAAGCTTGAGAAATATCCCTACTTCAATGCCTTGATGTCTGATATAAGCATATCGGCTTCAGCAGCACCCACTCTTCTTCCACCCTACTATTTTGAGAATGATGGTGTTGACTTCAATTTGATTAGTGGTGCGGACTTGAGTATGATTAGTAATGATCTAGTGAATGGGAATCCGACTCGAGCAACAGTGAGTGAAGTACTACGACACAACAAGTATTCCAAAATAGTTGTTTTGTCATTGGGAACTGGAACACCAGAAACTCAGCAGATTTTCAATGTTGAAATGGCTGCCACATGGAACAGTCAAACATGGCTTATTCCTTTGATCATTTTTCTTGATCGTGCAACAACCTCCATGAATGAATACTATCATGGTTCACTCTTCCGAAAACCTACCATTAACTACCTTCGAATTCAGGAATACGAATTGGATCCTGATCTCACAGACATGATTAATGTTGCAAAAGAAAACATGGAGGGTCTTGAAGAGACTGGGAAAGAACTTTTAGAAGAAAAAGTTAAGAAGATCAATTTGAACACTTTCTGTGTAGAAGAAGGCGTAGGAACAAATGCTGAGGCTCTTGACAGGCTTGCTGATATTTTGTACGGAGAAAGACAGCATCGTCTGAAACAGAAATCTATGGAAAAAGGAGGAAGACCATTTCTTAGGGTTCCTTCAGACAAAAGTGAAGTTAAGTGGGCATTTCTAAAGAACAAAGTTATGTGA 1242 0.4042 MAHFVFFVLLFAGQVIGGFSTQKLPPSDNGNTLTILSIDGGGIRGIIPATVLDYLDQALKARDPNADLAHFFDVIGGSGTGALITAMLATPSPHDPTRAAFTPAQIVEFYKQNGPHVFNSSRPGNGPQFDGKFLHDITRELLKDTRLSQTLTNVVIPTFDIKTQKPVIFSNYKLEKYPYFNALMSDISISASAAPTLLPPYYFENDGVDFNLISGADLSMISNDLVNGNPTRATVSEVLRHNKYSKIVVLSLGTGTPETQQIFNVEMAATWNSQTWLIPLIIFLDRATTSMNEYYHGSLFRKPTINYLRIQEYELDPDLTDMINVAKENMEGLEETGKELLEEKVKKINLNTFCVEEGVGTNAEALDRLADILYGERQHRLKQKSMEKGGRPFLRVPSDKSEVKWAFLKNKVM 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00169 413 Pfam Patatin-like phospholipase 36 216 IPR002641 GO:0006629
Viun10g00169 413 Gene3D Cytosolic phospholipase A2 catalytic domain 22 386 - -
Viun10g00169 413 ProSiteProfiles Patatin-like phospholipase (PNPLA) domain profile. 36 227 IPR002641 GO:0006629
Viun10g00169 413 Coils Coil 323 343 - -
Viun10g00169 413 PANTHER XYLOSE ISOMERASE 21 381 - -
Viun10g00169 413 SUPERFAMILY FabD/lysophospholipase-like 32 354 IPR016035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00169 Viun-Chr10 1214987 1217265 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00169 24 380 Miscellaneous Gene Families AT2G26560 38.205 1.87e-79 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00169 - - vun:114165690 542.347