Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01568 ATGGCTCATTTCCTTGTGTTGGTTTTGGTGGTTGCTACTCAACTAATTGGTGGATTCAGTACCCAGCTACCACCACCAATCTATGGAAACTTCATAAGCATTCTCACCATTGATGGTGGTGGAATGAAGGGCATTCTTCCATCGGTGGTTCTCGATCACTTGCACAAAGTTCTTAAGCTTAAGACACTTCCCTACTTCAATGCCAAATTGTCTGATATATGCATAGCAACTTCAGCTGAACCTGCTACTCTACCACCCTACTATTTTGAGAATGATGGTACAGAAGCTGCATTGAGTGAAGTGATACGATACAACAAGTATACCAAAATTGTGGCACTATCATTAGGGACTGGAGTAACAAAAGTTGAGGAGAAGTATGACGTTGAAATGGCTGCTAAATGGGACAAAATTCGTTGGATACAACCTGGACTTGAACTTCTTCCTCGTGCTTCTATGGACATGACTGAACATTACCTTGCCACACTAGCTATTCTCAGGCCTCCAACCAAACAAATAGCTACCTTCGAATTCAGGTATATATAG 543 0.418 MAHFLVLVLVVATQLIGGFSTQLPPPIYGNFISILTIDGGGMKGILPSVVLDHLHKVLKLKTLPYFNAKLSDICIATSAEPATLPPYYFENDGTEAALSEVIRYNKYTKIVALSLGTGVTKVEEKYDVEMAAKWDKIRWIQPGLELLPRASMDMTEHYLATLAILRPPTKQIATFEFRYI 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01568 180 PANTHER PATATIN 1 60 - -
Cca01g01568 180 PANTHER PATATIN 59 162 - -
Cca01g01568 180 PANTHER XYLOSE ISOMERASE 59 162 - -
Cca01g01568 180 PANTHER XYLOSE ISOMERASE 1 60 - -
Cca01g01568 180 SUPERFAMILY FabD/lysophospholipase-like 63 177 IPR016035 -
Cca01g01568 180 Gene3D Cytosolic phospholipase A2 catalytic domain 58 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01568 Cca-Chr1 34978804 34984018 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01568 64 162 Acyl Lipid Metabolism Gene Families AT4G37070 29.927 6.32e-14 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01568 - - ccaj:109788458 355.91