Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0827 ATGGCtcatttccttttgtttgttttcgtGTTTGCTGGTCAACTGACTGTTGGGTTCAGTACCCAGAAACTACCTCCACCAGACTCTGGAGACACTATAAGCATTCTTAGCATTGATGGTGGTGGTATCAAGGGAATTATCCCAGCAAGAGTTCTTGATCACTTAGATACGGCTCTTAAGGCTAAGGACCCAACTGCAACTCTAGCACATTATTTTGACGTGATAGCAGGGACTAGCACTGGTGGACTTATAGCAGCTATGTTAGCTAGCCCAAGCCCAGATGACCCTGATCGTCCTGGATTTACTCCTGCGGAAATCGTACAGTTCTACAAGGAATATGGCCCTTGTATATTCAATGAATCTAgACCTGGAATATGGAGCAAATTTGATGGGGAGTGCTTACATAACATAACTCGTGATCTATTGAAAGAAACACGACTAAATGAAACCTTGACAAATGTTGTAATCCCAACTTTCGACCTGTTGAAACAAAAGCCAGTTATATTCTCAAACTTTAAGCTAAACACAGTTCCCTACTTAAATGCCAAGATGTCGGATATATGCGTAGCGACTTCAGCTGCACCCACGCTTCTACCACCCCACTATTTTCAGAATGATGGTGTTGATTTCATTACGATTGATGGTGCTGTGGCTGCTAGTAATCCGACGCAAGCTGCAATCAGTGAAGTGATACAACACAACAAGTATACCAAAATCCTGCTACTGTCTTTAGGGACTGGTGTAACAAAACTTGAATTTGATATTAACGACGCTTTTACTTGGAATGAGAGCCAATGGAAAAACTTTGCAGAGGAACTTCTTTCTCATGCTTCTTCAAACATGACTGAATATTACCTTGCCACAGGATTCTCAGGTCTCCACCAACCCGTGAAAAACTACCTCCGAATTCAGGAATATAGCTTGGATCCATACCTGGATAACGGTATTAATGTTACGAAAGAAAACTTGGACAATCTTGAAGAGGCAGGAAAAAAACTGTTGCAAGAAAATGTTTTGAGGATAAATGTGAATACTTTTGATCTAGAAGAAACCGACGAGGGTACAAATGCTGACGCTCTTGACAGgtTGGCTGATATTTTGTATGAAGAGAAGAAGCTGCGTCTGAAAAGGAAATCTAAGGAGAAGAAAGGAAGACCATTTATTGAAACTATTGGAGTGCCTTTTGGTCGAATCCGATCAACTTAG 1206 0.4046 MAHFLLFVFVFAGQLTVGFSTQKLPPPDSGDTISILSIDGGGIKGIIPARVLDHLDTALKAKDPTATLAHYFDVIAGTSTGGLIAAMLASPSPDDPDRPGFTPAEIVQFYKEYGPCIFNESRPGIWSKFDGECLHNITRDLLKETRLNETLTNVVIPTFDLLKQKPVIFSNFKLNTVPYLNAKMSDICVATSAAPTLLPPHYFQNDGVDFITIDGAVAASNPTQAAISEVIQHNKYTKILLLSLGTGVTKLEFDINDAFTWNESQWKNFAEELLSHASSNMTEYYLATGFSGLHQPVKNYLRIQEYSLDPYLDNGINVTKENLDNLEEAGKKLLQENVLRINVNTFDLEETDEGTNADALDRLADILYEEKKLRLKRKSKEKKGRPFIETIGVPFGRIRST 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0827 401 Gene3D Cytosolic phospholipase A2 catalytic domain 25 380 - -
Ssu2g0827 401 SUPERFAMILY FabD/lysophospholipase-like 34 345 IPR016035 -
Ssu2g0827 401 PANTHER PATATIN 1 385 - -
Ssu2g0827 401 Pfam Patatin-like phospholipase 36 227 IPR002641 GO:0006629
Ssu2g0827 401 PANTHER XYLOSE ISOMERASE 1 385 - -
Ssu2g0827 401 ProSiteProfiles Patatin-like phospholipase (PNPLA) domain profile. 36 227 IPR002641 GO:0006629
Ssu2g0827 401 Coils Coil 316 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0827 Ssu-Chr2 42805279 42812474 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0827 24 382 Miscellaneous Gene Families AT2G26560 40.152 2.43e-78 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0827 - - vun:114165690 482.641