Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01567 ATGAGGCATTTAGATCAATTAATGGCTCCATTACTCTTGTTTGCTCTTGTGTTTGCCAGCCAATTGATGGCTGGATTCAATACACCACTACCACCACCGTTCTATGGAAACCATATATCAATTCTCAGCATAGATGGTGGTGGTATCAGGGGGATTATTCCCGCAGTTGTTCTTGATTACTTGGACAAGGCTCTTAAGGCTAAGGACCCAACAACACCATTAGCACATTATTTTGACGTCATATCAGGAACTAGTACAGGTGGAATCATGACTGCAATGTTAGCAGCCCCAAACTCATCTCACAGTAATCATCCTCTCTTTACTCCCGCTGAAGTCGTACAATTCTACAAGGAATATGGCCCTAAAATATTTGAAGACAGCTTTTGGGGGCGATGTCCCAAGTATAGTGGGAATTTCTTACGAGAAAAAACATGGGAGCTACTGAAAGAAACACGACTTAGTCAAACATTGACCAACGTGGTAATACCAACTTTCGACCAGAAGAAACTCAAGCCAGTTATATTCTCAAACTACAAGCTGAAGAAAGAAACTCACTTAAATGCCAAACTCGCAGATATATGCCTCGGGACTTCCGCTGCACCCACTTATCTACCACATCACGAATTTACGAATGAGGGTGTTGAATTCAGTTTGATTGATGGTGCTGTGGCTGCTAATAATCCAGCCATGGTTGCTGTGAGCGAAGTGCTGCAACACAGTGAGCAAAAGGAAATCCTGATGCTGTCATTAGGAACTGGCACAACAAAAGGGGACAAGAAGTTATCTGGCATCATAGAAGGACCGTGTAAGTTTTGGTGGCTAATTACCAACACTGGACTTATTAGTGATGCTATATATGATACAGACATGATCTCCTACTACCTTGCTACAGTCTTCCCAGGCATTTTACCACTTAATAACTTCCTTCGGATTCAGGAGTATAACCTGGATCCATCCATGGAAGCAATGGATAACGTTGATATAATAAACATGGAGAATCTTGAAAAGGTAGGCCAAAATCTGTTGCACCAAAATGTTATGAGGATGAAGGCGGATATCACAGATGAAATAAATTATACGAATGCCCAGGCTCTTGACAGTTTGGCTGAGATATTATACAAAGAGAGGCAGTTCCGTCTGAGAAAGAAATCTATGGAAAAAGAAGGAAGCCCATTTATTGAAACTGTCTAA 1191 0.4148 MRHLDQLMAPLLLFALVFASQLMAGFNTPLPPPFYGNHISILSIDGGGIRGIIPAVVLDYLDKALKAKDPTTPLAHYFDVISGTSTGGIMTAMLAAPNSSHSNHPLFTPAEVVQFYKEYGPKIFEDSFWGRCPKYSGNFLREKTWELLKETRLSQTLTNVVIPTFDQKKLKPVIFSNYKLKKETHLNAKLADICLGTSAAPTYLPHHEFTNEGVEFSLIDGAVAANNPAMVAVSEVLQHSEQKEILMLSLGTGTTKGDKKLSGIIEGPCKFWWLITNTGLISDAIYDTDMISYYLATVFPGILPLNNFLRIQEYNLDPSMEAMDNVDIINMENLEKVGQNLLHQNVMRMKADITDEINYTNAQALDSLAEILYKERQFRLRKKSMEKEGSPFIETV 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01567 396 PANTHER PATATIN 10 387 - -
Cca01g01567 396 PANTHER XYLOSE ISOMERASE 10 387 - -
Cca01g01567 396 Gene3D Cytosolic phospholipase A2 catalytic domain 35 385 - -
Cca01g01567 396 SUPERFAMILY FabD/lysophospholipase-like 39 365 IPR016035 -
Cca01g01567 396 Pfam Patatin-like phospholipase 42 232 IPR002641 GO:0006629
Cca01g01567 396 ProSiteProfiles Patatin-like phospholipase (PNPLA) domain profile. 42 233 IPR002641 GO:0006629
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01567 Cca-Chr1 34855434 34861628 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01567 28 379 Miscellaneous Gene Families AT2G26560 43.445 3.47e-85 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01567 - - gmx:100802647 548.51