Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01738 ATGGCTCATTTGCTTTTCTTTGTTTTGATCTTTGCTGCGCAACTGATCGGTGGATTCAGTGCCCAAAAGCAGCATCCGTCCAACAACGAAAAACTGATAACTATTCTGAGCATTGATGGTGGTGGTATCAAGGCCATTATTCCAGCAATAATTCTTGATTACTTAGACAAGGCTCTTAAGGTTAAGGATCCAAAAACAGATTTAGCAGATTACTTTGATGCGATAGGAGGAACCAACACTGGTTCAATCACAGCAGCCATGTTAGCCACCCCAAGCCTTGATCATCCCACTCGTCCTGCTTATACTCCTGCACAGATAGTAAACTTCTACAAACTAAATGGCCCTCGGTTTTCTCGAAACGCCCCAGGAACCCAACAATTGGCGCCCACCGTGGGGCAAGGATTCAAGAATTCCCAAGGAGCGATGGCAACCAAGTTCGACGTAGAAAAGTTCAACGGCGCTAATGACTTCGGGCTGTGGAAGATCAAGATGGAGGCAATCTTGATACAGCAGGGATGTGATGAAGCGTTGAAGGGTGAGTCGAGGATGAGTGGTACCATGACTCAAGAAGAGAAGAAGAAGATGGGAGATAAGGCAAGGAGTGCAATCATCTTGTGCCTTGGTGATAAGGTACTGAGGGAGGTTGCGAAGGAGAAGACTGCCGCTGAAATCTGGGCAAAACTAGAATCTCTGTACATGACGAGATCGTTGGCTCATAGGTTGTGCCTGAAGCAGCAACTCTTTTCGTTCAAGATGTCAGAATCAAGAACGATAGAGGAGCAGATTGCAGAATTCAGCAAGATAGTTGATGATCTGGAGAATATTGAAGTGAAGTTGGAGGATGAAGATAAAGCTGTCATCCTGTTGAATGCGCTTCCAAAAACCTTCGAGCATTTCAGGGATGCGTTACTCTACGGGAAAGATCAAGTGATCACGTTAGAGGAGGTTCTGACGTCAATTCGAACCAAGGAGTTCCAAAAACTCCAAGATTCGAAGACAACCGAGGAAGGAGCGTCCGGATTGATCTCGGTGAAAGGGAAAGGGAAGAAGCAGTCTGGAAAAGAGAAGAAGCTGAATCCGGACGGTACGAAGCAGGTGCGTTGCTTCAAGTGCCAGAAGATGGGTCATATCAAGAAGTTCTGCCCGGAGAAAGGAAAGGCCGGTCGGCCACAAGAAACCGCTGATGTGGCAGAGGCGTCTGAGGGATATGAGTCGGCTGGAGTGCTGGTGGCTTCGTCTGAAGATCCTCAAAGAAGCTGGGTCATGGATTCCGGCTGCTCCTATCACATGTGCCCGGTGAAGGAGTTTTTTGAGAATCTTGATCAGAAAGAGCATGGTAATGTACTGCTCGGAAATAACAAAGCTTGCCGAGTGCAAGGTGTGGGGTCGGTGAGGCTGAAGATGTTTGACAATCGTGAGATGGTGTTGCAGGCCGTTAGGTATGTGCCCGAACTAAAGAGAAATTTGATTTCTATTAGTGCATTTGATCTTGGAGGTTACACCACTAAAGTTGAAGATGGAGTAATGAGGGTTTGTTCTGGAGATTCTGTGGTTGCCAAAGGCAGAAGGAGGAACGGCTTGTACATTCTGGAGGGATCAACTGTCATTGGTCATGTCTCAGTAGCAAGTGGGACCGAGAATACCGCCCGGTTATGGCACTTGAGGATGGGACACATCAGTGAGAAGGGTCTTGAAGAATTGGAAAAGCAAGACTTGCTTCTGGGAGACAAACTGCAGAAGCTGGATTTCTGTGACCATTGTGTCTTAGGGAAATCACACAGGATACCGTTCGGAAAAGGGAAACACTCAACCGAACGCCCCTTTGAATATGTCCATGCTGACTTATGGGGACCGGCAAGAACCTTAACTCATGGTGGAGGAGCGTATTTCTTAAGTATAATTGATGATTTCTCAAGGAGAGTGTGGATTTACGTTCTAAAAAATAAGTCTGAAACGTTTCAGAAGTTCAAAGAGTGGCACACACAGATTGAGAACCAATTGAGGTGTAGGCTGAAATGCCTAAGAACCGATAATGGGTTGGAGTTCGTTTCAGAGGAGTTTAATGGTTTTTGCAAAGAGAAAGGGATCAGGAGGCACAGAACGGTCGTTGGAACTCCTCAACAGAATGGATTGGCCGAACGGATGAATAGAACCATTCTGGAGAGGGTCCGGTGCATGTTGCTGGGATCAGGGTTGTCAAAGGCTTTCTGGGGAGAGGCTGCCAATACGGCCGTCTATCTGATTAACAGGAGTCCGTCTTCAGCTCTCAATTTTAAAACGCCAATGGAAGTGTGGAGTGGACGACCGGCTGATTACTCACACTTGAGAGTGTTTGGTTCTTTGGCGTTTGCTCATGTCAGGGGTGATAAGCTGGATTCCCGGGCGGCGAAATGTATCTTTCTTGGATACGCCGACGGAGTTAAGGGATACAGGTTATGGAGGTTAGATTCACCTTCAAAACTAATCATTAGTAGGGATGTCATTTTTGATGAAACAAGGATGGCGATGCACCCGGAAAACTCTGGAAGTGAGAAGAAGATTCTCGTGGAGGTGGAGCATACTACTAATGGAGCTGGCACGCCCGGTGGGACTGAGGAAAACCAAACGGGTGAAGGGCAAGTTGAAAACGGTCGGACGATAGAGGAGAACCGATCGGATGAATTTCGAACAGACCTTAGTGATGATACAGATGGTATGTCTGGCGAGGGAAGTCATGGAAAAGCTGCTGGTGTTGATTTGAGAAACTATCAGCTTGTTCGTGACAGAGAAAGAAGGATCTCCAAGCCAACCAAACGGTTTGGAGAGGCGGATCTAATCTGCTACGCCCTGAATGCTGCTGAAGATCTTAACCGATCGGATGAACCGAGAAGTTATAAGGAGGCTCTTGACAGCAGTGAGCGGCATCTTTGGCAGGGTGCTATGGAAGAAGAGTTGGAGGCTTTGAAAAAGAATAGCACCTGGAGATTGGTGGATCTGCCGAAGGGTAAGAAGGTCATAGGTTCGAAATGGATTTTCAAGAAAAAGGAAGCTACACCGGGCGGTGAGAAAGCGAGGTACAAAGCTAGGCTTGTTGCCAAAGGCTTTACTCAGATTGAAGGCGTAGACTATCATGAGATCTTTGCTCCAGTGGTTAAGCATTGTTCGGTCAGAGTTCTGATGGCAATAGTTGCGCATTGCAATTTGCATCTTGAACAGTTGGACGTTCGGACAGCTTTTCTGCACGGCGATTTGGAGGAAACCATCTATATGAAGCAACCGGACGGTTTCGCTGTGGATGATAGGGTGTGTCTGTTGCAGAAGTCACTTTATGGCTTGAAGCAAAGCCCAAGGCAGTGGTACAGGAAATTTGATGACTTTCTGATAAAGCTGAACTTCAAGCGGTGCAATTATGATGACTGTGTTTACACTCTGAATCATGACGGTGAAATGTTATATCTCCTGCTTTATGTGGATGATATCCTAATTGCTAGCAGTGACAGGGGCATGATCGGTGAGACGAAAGCAAGGTTGGCGGATGCTTTCGAAATGAAAGAGCTAGGGGAAGCAAGGCGGATTTTGGGCATAGACATTAAAAGGGATAGACCGGGCGGTAACCTTTTTCTGTCTCAGGAGTGCTATTTGCAGAAGGTAATTTCAAGGTATCGGATGGCTGAATCTAAAATGGCCAACACGCCGGTCGGTCAACACTTGAAACTTACCAAGGAGCAATGCCCAAAGACCGAGGAAGAAAGAAAGAAGATGGAATCTGTTCCATTTTCAAATGGGATTGGGAGCATTATGTACGGCATGGTCTGCACAAGACCGGACGTGGCGCACGGTGTTAGTGTTCTCAGTCAGTTCATGGTTAATCCTGGACCAACACACTGGGAAGCGTTGAAGTGGATGCTCAGATATATACGGGGGTCTCTCGGTACTGGATTGTCTTTCCAGAATAACTTTCAAGGTGGAGGTTATATTGAAGGTTTTGTTGATTCTGACTTTGCCGGATGCATGGACACTAGGAAATCCCGGTCGGGATATGTGTTTACACTGTTTGGGACTGCTGTTAGCTGGAGGTCTACACTACAGTCGGTTGTGGCTTTGTCAACTACGGAAGCTGAGTACTATGCTCTTGCTGAAGGAGTTAAGGAGGCACTGTGGTTGAAAGGTTTGGTTCGGGAACTTGGTTTTGATCAGAAGTCTGTATGTGTTCATTGCGACAGCCAGAGTGCTATTCATCTGGCCAATCATCAAATTTATCATTCCAGAACCAAGCATATTGACGTCAAGCTGCACTTTGTCAGAAGCATTGTTGAATCCGGTGACGTTCAAATCTGCAAAATTGCATCCGAAGAGAATCCTGCAGATATGTTAACAAAGCCACTCGCTAAGGAGAGGTTTCTCTTGTTGTTGTCCAGGATTGGGTGTCTACCGGTCGGTCACTAA 4425 0.4667 MAHLLFFVLIFAAQLIGGFSAQKQHPSNNEKLITILSIDGGGIKAIIPAIILDYLDKALKVKDPKTDLADYFDAIGGTNTGSITAAMLATPSLDHPTRPAYTPAQIVNFYKLNGPRFSRNAPGTQQLAPTVGQGFKNSQGAMATKFDVEKFNGANDFGLWKIKMEAILIQQGCDEALKGESRMSGTMTQEEKKKMGDKARSAIILCLGDKVLREVAKEKTAAEIWAKLESLYMTRSLAHRLCLKQQLFSFKMSESRTIEEQIAEFSKIVDDLENIEVKLEDEDKAVILLNALPKTFEHFRDALLYGKDQVITLEEVLTSIRTKEFQKLQDSKTTEEGASGLISVKGKGKKQSGKEKKLNPDGTKQVRCFKCQKMGHIKKFCPEKGKAGRPQETADVAEASEGYESAGVLVASSEDPQRSWVMDSGCSYHMCPVKEFFENLDQKEHGNVLLGNNKACRVQGVGSVRLKMFDNREMVLQAVRYVPELKRNLISISAFDLGGYTTKVEDGVMRVCSGDSVVAKGRRRNGLYILEGSTVIGHVSVASGTENTARLWHLRMGHISEKGLEELEKQDLLLGDKLQKLDFCDHCVLGKSHRIPFGKGKHSTERPFEYVHADLWGPARTLTHGGGAYFLSIIDDFSRRVWIYVLKNKSETFQKFKEWHTQIENQLRCRLKCLRTDNGLEFVSEEFNGFCKEKGIRRHRTVVGTPQQNGLAERMNRTILERVRCMLLGSGLSKAFWGEAANTAVYLINRSPSSALNFKTPMEVWSGRPADYSHLRVFGSLAFAHVRGDKLDSRAAKCIFLGYADGVKGYRLWRLDSPSKLIISRDVIFDETRMAMHPENSGSEKKILVEVEHTTNGAGTPGGTEENQTGEGQVENGRTIEENRSDEFRTDLSDDTDGMSGEGSHGKAAGVDLRNYQLVRDRERRISKPTKRFGEADLICYALNAAEDLNRSDEPRSYKEALDSSERHLWQGAMEEELEALKKNSTWRLVDLPKGKKVIGSKWIFKKKEATPGGEKARYKARLVAKGFTQIEGVDYHEIFAPVVKHCSVRVLMAIVAHCNLHLEQLDVRTAFLHGDLEETIYMKQPDGFAVDDRVCLLQKSLYGLKQSPRQWYRKFDDFLIKLNFKRCNYDDCVYTLNHDGEMLYLLLYVDDILIASSDRGMIGETKARLADAFEMKELGEARRILGIDIKRDRPGGNLFLSQECYLQKVISRYRMAESKMANTPVGQHLKLTKEQCPKTEEERKKMESVPFSNGIGSIMYGMVCTRPDVAHGVSVLSQFMVNPGPTHWEALKWMLRYIRGSLGTGLSFQNNFQGGGYIEGFVDSDFAGCMDTRKSRSGYVFTLFGTAVSWRSTLQSVVALSTTEAEYYALAEGVKEALWLKGLVRELGFDQKSVCVHCDSQSAIHLANHQIYHSRTKHIDVKLHFVRSIVESGDVQICKIASEENPADMLTKPLAKERFLLLLSRIGCLPVGH 1474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01738 1474 Coils Coil 262 282 - -
Vimu9g01738 1474 Gene3D Cytosolic phospholipase A2 catalytic domain 20 170 - -
Vimu9g01738 1474 ProSiteProfiles Zinc finger CCHC-type profile. 367 383 IPR001878 GO:0003676|GO:0008270
Vimu9g01738 1474 Pfam Integrase core domain 605 706 IPR001584 GO:0015074
Vimu9g01738 1474 MobiDBLite consensus disorder prediction 857 876 - -
Vimu9g01738 1474 SUPERFAMILY DNA/RNA polymerases 983 1426 IPR043502 -
Vimu9g01738 1474 PANTHER GAG-POL-RELATED RETROTRANSPOSON 508 1470 - -
Vimu9g01738 1474 SUPERFAMILY Retrovirus zinc finger-like domains 358 388 IPR036875 GO:0003676|GO:0008270
Vimu9g01738 1474 Gene3D - 343 396 - -
Vimu9g01738 1474 ProSiteProfiles Integrase catalytic domain profile. 603 769 IPR001584 GO:0015074
Vimu9g01738 1474 MobiDBLite consensus disorder prediction 877 901 - -
Vimu9g01738 1474 ProSiteProfiles Patatin-like phospholipase (PNPLA) domain profile. 36 192 IPR002641 GO:0006629
Vimu9g01738 1474 Pfam GAG-pre-integrase domain 526 592 IPR025724 -
Vimu9g01738 1474 CDD RNase_HI_RT_Ty1 1320 1458 - -
Vimu9g01738 1474 MobiDBLite consensus disorder prediction 339 361 - -
Vimu9g01738 1474 Pfam gag-polypeptide of LTR copia-type 194 323 - -
Vimu9g01738 1474 MobiDBLite consensus disorder prediction 854 909 - -
Vimu9g01738 1474 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 984 1226 IPR013103 -
Vimu9g01738 1474 SUPERFAMILY Ribonuclease H-like 605 778 IPR012337 -
Vimu9g01738 1474 Gene3D - 600 778 IPR036397 GO:0003676
Vimu9g01738 1474 SMART c2hcfinal6 367 383 IPR001878 GO:0003676|GO:0008270
Vimu9g01738 1474 Pfam Patatin-like phospholipase 36 92 IPR002641 GO:0006629
Vimu9g01738 1474 SUPERFAMILY FabD/lysophospholipase-like 32 118 IPR016035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01738 Vimu-Chr9 26621023 26625886 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01738 949 1428 Receptor kinase-like Gene Family AT4G23160 37.295 1.60e-92 322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01738 - - bna:106351154 1069.3