Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi2g0842 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0843 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0844 Acco11g1299 . . . Adu05g00144 . Aed6g0144 . Aev05g0175 . Ahy15g0136 . Aip05g00133 . . . . . Apr7g1784 . Arst5g00179 . Bach4g00962 . Bisa11g2070 . Bva08g01117 . . Car07g01972 Cca06g01003 . Dere09g1349 . Dod02g0184 . Enph13g1635 . Glsi05g1063 . Gma01g00119 Gma09g01937 . . Gso1g0123 Gso1g0123 . . Lal15g0379 Lal16g0435 . . . Lal23g1133 Lan18g0790 Lan18g0790 . . . Lan18g0790 . . . . . . . . . . . . Lja2g0802 Lja4g2820 Mal6g0656 . Mepo5g01343 . Mesa17g01462 . Mibi12g1095 . Mtr5g1201 . Phac2g02160 . Phco4g00550 . Prci10g1444 . Psa2g3151 . Pste1g00691 . . . . . Pumo8g01422 . Pvu2g1403 . Rops1g01277 . . . Spst2g01199 . Ssu2g1982 . Sto6g4152 . Tpr2g1446 . . . Tsu05g01209 . Vian10g01065 . Vifa1g05924 . Vimu7g03455 . Viun2g01476 . . . Vra11g1032 .
Vvi2g0845 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0846 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Psa2g3168 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0847 Acco11g1300 . . . Adu05g00147 . . . . . . . . . . . . . . . Arst5g00181 . Bach4g00960 . Bisa11g2069 . Bva08g01115 Bva11g01319 . . . Cca11g00857 Dere09g1347 . . . . . Glsi05g1065 . Gma01g00117 . . . Gso1g0121 . . . Lal15g0376 Lal16g0433 . . . Lal23g1134 Lan18g0792 Lan18g0792 . . . Lan18g0792 . . . . Lele49g0889 Lele50g0931 Lele51g0905 Lele52g0914 . . . . Lja2g0800 . Mal6g0653 . . . Mesa17g01448 . Mibi12g1096 . Mtr5g1198 . . . Phco4g00552 . Prci10g1440 . . . Pste1g00667 . Pte14g00718 Pte12g00638 . . Pumo8g01425 . Pvu2g1401 . Rops1g01279 . Seca12g03293 . Spst2g01197 . . Ssu5g0928 Sto6g4150 Sto11g1282 Tpr2g1441 . . . . . Vian10g01063 . Vifa1g05929 . Vimu7g03450 . Viun2g01478 . Vivi2g02457 . . .
Vvi2g0848 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0849 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0850 . . . . . . Aed6g0143 . Aev05g0176 . Ahy15g0137 . Aip05g00134 . . . . . Apr7g1785 . . . . . . . . . . . Cca06g01004 . . . Dod02g0185 . . . . . . Gma09g01938 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Ssu2g1984 . . . . . . . . . . . . . . . . . . . Vra11g1031 .
Vvi2g0851 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Car Car07g01972 Chr07 22937822 22940041 +
Lja Lja4g2820 Chr4 47389217 47391834 +
Vvi Vvi2g0842 Chr2 9021994 9032208 -
Vvi Vvi2g0843 Chr2 9039188 9039439 -
Vvi Vvi2g0844 Chr2 9053731 9055556 -
Acco Acco11g1299 Chr11 27199020 27202065 -
Adu Adu05g00144 Chr05 1635561 1640380 -
Aed Aed6g0144 Chr6 1284321 1287619 +
Aev Aev05g0175 Chr05 1366394 1369443 -
Ahy Ahy15g0136 Chr15 1640387 1645019 -
Aip Aip05g00133 Chr05 1550195 1555061 -
Apr Apr7g1784 Chr7 25192121 25195158 -
Arst Arst5g00179 Chr5 1655506 1660010 -
Bach Bach4g00962 Chr4 6458447 6461074 +
Bisa Bisa11g2070 Chr11 43696217 43699756 +
Bva Bva08g01117 Chr08 5701196 5704434 +
Car Car07g01972 Chr07 22937822 22940041 +
Cca Cca06g01003 Chr06 23841438 23844838 -
Dere Dere09g1349 Chr09 17518316 17523561 +
Dod Dod02g0184 Chr02 2623651 2627041 -
Enph Enph13g1635 Chr13 22081165 22084968 +
Glsi Glsi05g1063 Chr05 60481300 60486007 -
Gma Gma01g00119 Chr01 1352445 1355704 +
Gma Gma09g01937 Chr09 44990506 44994718 -
Gso Gso1g0123 Chr1 1364070 1367454 +
Gso Gso1g0123 Chr1 1364070 1367454 +
Lal Lal15g0379 Chr15 2549745 2553109 +
Lal Lal16g0435 Chr16 2641845 2646050 +
Lal Lal23g1133 Chr23 12848948 12852388 -
Lan Lan18g0790 Chr18 13364796 13368717 -
Lan Lan18g0790 Chr18 13364796 13368717 -
Lan Lan18g0790 Chr18 13364796 13368717 -
Lja Lja2g0802 Chr2 7370335 7373486 +
Lja Lja4g2820 Chr4 47389217 47391834 +
Mal Mal6g0656 Chr6 9018052 9018525 +
Mepo Mepo5g01343 Chr5 13786236 13790273 +
Mesa Mesa17g01462 Chr17 19748973 19752343 +
Mibi Mibi12g1095 Chr12 26190409 26193802 -
Mtr Mtr5g1201 Chr5 12205328 12209329 +
Phac Phac2g02160 Chr2 23352661 23356256 +
Phco Phco4g00550 Chr4 4038942 4041698 -
Prci Prci10g1444 Chr10 9691393 9695860 +
Psa Psa2g3151 Chr2 362835909 362839632 -
Pste Pste1g00691 Chr1 2177547 2180766 +
Pumo Pumo8g01422 Chr8 46922127 46925423 -
Pvu Pvu2g1403 Chr2 26829327 26832377 +
Rops Rops1g01277 Chr1 29161311 29164288 -
Spst Spst2g01199 Chr2 10601222 10604058 +
Ssu Ssu2g1982 Chr2 72634987 72637951 -
Sto Sto6g4152 Chr6 44864203 44866689 +
Tpr Tpr2g1446 Chr2 17029979 17034050 +
Tsu Tsu05g01209 Chr05 10752512 10756499 +
Vian Vian10g01065 Chr10 12094870 12097609 +
Vifa Vifa1g05924 Chr1 929076771 929079447 -
Vimu Vimu7g03455 Chr7 29184241 29185506 +
Viun Viun2g01476 Chr2 25088723 25091762 -
Vra Vra11g1032 Chr11 9365343 9368269 +
Vvi Vvi2g0845 Chr2 9107062 9115010 -
Vvi Vvi2g0846 Chr2 9124845 9136997 -
Psa Psa2g3168 Chr2 363768823 363771880 -
Vvi Vvi2g0847 Chr2 9138182 9152411 -
Acco Acco11g1300 Chr11 27219029 27225997 +
Adu Adu05g00147 Chr05 1652893 1702276 +
Arst Arst5g00181 Chr5 1671682 1677153 +
Bach Bach4g00960 Chr4 6443521 6449657 -
Bisa Bisa11g2069 Chr11 43673348 43680721 -
Bva Bva08g01115 Chr08 5687095 5693431 -
Bva Bva11g01319 Chr11 13490502 13496195 -
Cca Cca11g00857 Chr11 17053008 17069159 -
Dere Dere09g1347 Chr09 17500649 17507242 -
Glsi Glsi05g1065 Chr05 60491149 60500422 +
Gma Gma01g00117 Chr01 1326732 1335747 -
Gso Gso1g0121 Chr1 1338202 1348488 -
Lal Lal15g0376 Chr15 2530936 2538597 -
Lal Lal16g0433 Chr16 2626263 2634597 -
Lal Lal23g1134 Chr23 12854400 12863399 +
Lan Lan18g0792 Chr18 13380233 13386577 +
Lan Lan18g0792 Chr18 13380233 13386577 +
Lan Lan18g0792 Chr18 13380233 13386577 +
Lele Lele49g0889 Chr49 5494407 5499669 -
Lele Lele50g0931 Chr50 5869442 5874391 -
Lele Lele51g0905 Chr51 5566384 5572379 -
Lele Lele52g0914 Chr52 5906011 5911302 -
Lja Lja2g0800 Chr2 7350799 7359162 -
Mal Mal6g0653 Chr6 8990353 8996746 -
Mesa Mesa17g01448 Chr17 19507130 19512830 -
Mibi Mibi12g1096 Chr12 26208854 26214008 +
Mtr Mtr5g1198 Chr5 12116201 12122913 +
Phco Phco4g00552 Chr4 4060690 4072141 +
Prci Prci10g1440 Chr10 9676057 9682469 -
Pste Pste1g00667 Chr1 2104205 2119593 -
Pte Pte14g00718 Chr14 28285811 28290772 +
Pte Pte12g00638 Chr12 6047561 6052088 -
Pumo Pumo8g01425 Chr8 46943865 46950613 +
Pvu Pvu2g1401 Chr2 26797730 26810044 -
Rops Rops1g01279 Chr1 29184738 29193839 +
Seca Seca12g03293 Chr12 68578197 68583919 -
Spst Spst2g01197 Chr2 10575491 10589646 -
Ssu Ssu5g0928 Chr5 25787097 25798597 -
Sto Sto6g4150 Chr6 44854224 44859173 -
Sto Sto11g1282 Chr11 12530235 12540290 -
Tpr Tpr2g1441 Chr2 16935043 16946698 +
Vian Vian10g01063 Chr10 12058708 12074655 -
Vifa Vifa1g05929 Chr1 929704403 929705307 +
Vimu Vimu7g03450 Chr7 29156833 29157348 -
Viun Viun2g01478 Chr2 25109834 25121544 +
Vivi Vivi2g02457 Chr2 113274847 113278935 +
Vvi Vvi2g0848 Chr2 9179377 9191556 +
Vvi Vvi2g0849 Chr2 9198880 9205984 -
Vvi Vvi2g0850 Chr2 9220341 9222116 +
Aed Aed6g0143 Chr6 1272337 1274007 +
Aev Aev05g0176 Chr05 1378422 1380795 -
Ahy Ahy15g0137 Chr15 1650416 1654780 -
Aip Aip05g00134 Chr05 1562249 1564689 -
Apr Apr7g1785 Chr7 25205001 25207264 -
Cca Cca06g01004 Chr06 23862352 23864415 -
Dod Dod02g0185 Chr02 2643485 2647050 -
Gma Gma09g01938 Chr09 45007074 45008993 -
Ssu Ssu2g1984 Chr2 72679410 72681690 -
Vra Vra11g1031 Chr11 9348047 9351096 +
Vvi Vvi2g0851 Chr2 9222170 9222397 +