Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1201 ATGAATCATCATACCTTACGTTGTTGTGGGAACATACCCAAAACTCATTTCCTATTTTCATTTTTTTCTCTATTTTTTCTCTTCAGTTTCACAAACTCAGCTTTCGACCTTGCAACCATACCCTTCAACGATGGTTATTCTCATCTCTTTGGAGATGGTAACGTTGTTCGTTCCTCCGATGGCAACGGTGTTCAACTCCTCCTCGATCGTTACACCGGTTCTGGTTTTATTTCATCAAATATGTATCAACATGGATTCTTCAGCGCAAATATCAAGTTACCATCGAATTATTCTGCTGGAATTTGTGTTGCGTTTTATACATCAAACGGTGATGTGTTTGAGAAAACCCACGATGAGTTGGATTTTGAGTTCCTAGGTAACATAGCTGGAAAACCATGGCGGTTTCAAACAAACTTGTATGGAAATGGAAGTACTCACCGTGGACGTGAGGAACGTTATCGTCTTTGGTTCGACCCAACTAAAGGATATCATAGATATAGCATTCTTTGGACTGCGAAAAATGTCATATTTTACATTGATGAAGTTCCAATTAGGGAGGTGTTAAGAAATGAGGAAATGGGAAGTGAATACCCAGTCAAACCAATGTCATTGTATGCTACGATATGGGATGCATCGAATTGGGCAACATCGGGTGGAAAATACAAAGTAAATTATAAATATGCTCCTTTTGTGGTTGAATTTAAGGACCTAGTCCTCAAAGGTTGTTCAGTTGATCCAATTCAAGAAGTATCCGACAACGACGTTTGCTCTGACCAAAACGTCGATCTTGAAGCTCAAGACTATGCCAATGTGACCCCCATGCGCCGCCTCGCAATGCGAAGATTCCGTCAACGCTTCATGTACTACTCTTATTGTTATGATACAATTAGGTACCCAGTGCCACCACCAGAGTGTAATATTATTCCAGCGGAGAAACAAAGGTTTAAGGAGACCGGAAGGTTGAAGTTTGGTGGGAGCCACCGCCGACATTCTAGGCGGGGTGGCCGTACTTCAACTCCGGTAGAGGACACCGATCAAGGTGATATGTGA 1050 0.419 MNHHTLRCCGNIPKTHFLFSFFSLFFLFSFTNSAFDLATIPFNDGYSHLFGDGNVVRSSDGNGVQLLLDRYTGSGFISSNMYQHGFFSANIKLPSNYSAGICVAFYTSNGDVFEKTHDELDFEFLGNIAGKPWRFQTNLYGNGSTHRGREERYRLWFDPTKGYHRYSILWTAKNVIFYIDEVPIREVLRNEEMGSEYPVKPMSLYATIWDASNWATSGGKYKVNYKYAPFVVEFKDLVLKGCSVDPIQEVSDNDVCSDQNVDLEAQDYANVTPMRRLAMRRFRQRFMYYSYCYDTIRYPVPPPECNIIPAEKQRFKETGRLKFGGSHRRHSRRGGRTSTPVEDTDQGDM* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1201 349 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 33 234 IPR000757 GO:0004553|GO:0005975
Mtr5g1201 349 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 268 305 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Mtr5g1201 349 ProSitePatterns Glycosyl hydrolases family 16 active sites. 119 129 IPR008263 GO:0004553|GO:0005975
Mtr5g1201 349 Gene3D - 29 305 - -
Mtr5g1201 349 SUPERFAMILY Concanavalin A-like lectins/glucanases 42 306 IPR013320 -
Mtr5g1201 349 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 24 328 IPR044791 GO:0004553
Mtr5g1201 349 PIRSF EndGlu_transf 11 310 IPR016455 GO:0010411|GO:0016762|GO:0042546
Mtr5g1201 349 Pfam Glycosyl hydrolases family 16 46 226 IPR000757 GO:0004553|GO:0005975
Mtr5g1201 349 CDD GH16_XET 38 305 IPR016455 GO:0010411|GO:0016762|GO:0042546
Mtr5g1201 349 MobiDBLite consensus disorder prediction 319 349 - -
Mtr5g1201 349 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 24 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1201 Mtr-Chr5 12205328 12209329 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1201 12 327 Glycoside Hydrolase AT1G32170 69.716 4.97e-166 465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1201 K08235 - gmx:100786236 592.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1201 5 12205328 12209329 Mtr5g1201 5 12205328 12209329 ECH