Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05924 ATGGATCACCATAAAACTCATTCTCTATTCTATTTTTCTCTCTTTCTTCTCTTCACTTTCACAATTTCAGCTTTCGACCTTGCAACCATACCCTTCAATGATGGCTATTCTCCTCTCTTCGGAAATGGCAACGTCGTTCGTTCCCTCGACGGTAACGCCGTTCAACTCCTCCTTGATCGTTACACCGGTTCTGGTTTTATTTCATCCAATATGTATCAATATGGATTCTTCAGTGCTAATATAAAGCTTCCATCGAATAACACAGCTGGTATTTGTGTTGCGTTTTATACATCAAACGGCGATGTGTTCGAGAAATCCCATGATGAATTGGACTTTGAATTCCTAGGTAACGTAGCTGGAAAACCATGGCGGTTTCAAACAAATTTGTATGGAAATGGAAGCACTCATCGTGGTCGTGAAGAACGTTATCGTCTTTGGTTTGATCCAAGTAAAGGATACCATAGATACAGTATTCTATGGACACAAAAAAACGTAATATTTTACATTGATGAAGTTCCAATTAGAGAAGTGTTAAGAAGTGAAGAAATGAGAGGTGAATATCCATCTAAGCCAATGTCGCTCTATGCAACCATATGGGATGCATCAAATTGGGCTACATCGGGTGGAAAATACAAAGTGAACTATAAATATGCTCCTTTTGGAGCTGACTTTAAGGACCTAGTCCTCAAGGGTTGCACTACTGATCCAGTTGAAGAATTCTCTGACATCGAGGGTTGCGCCGATCAAAACGCCCATCTTGAAGCCCAAGATTACGCCCAGGTGACTCCTATACGTAGTATGAAAATGCGGAGGTTTCGCCAACGTTTCATGTACTACTCTTATTGTTATGATACGATTAGATATCCTATTCCACCGTCAGAGTGTCATTTTAATCTGGCGGAGAAACAAAGGTTTAGGGAGACTGGAAGGTTGAAATTCGGCGGGAGTCATCGCCGACTGTCTAGACGGAGAGGCCGAAATTCAACTCCTGTAGAGGACACAGATCAGAGTGATATGTGA 1020 0.4157 MDHHKTHSLFYFSLFLLFTFTISAFDLATIPFNDGYSPLFGNGNVVRSLDGNAVQLLLDRYTGSGFISSNMYQYGFFSANIKLPSNNTAGICVAFYTSNGDVFEKSHDELDFEFLGNVAGKPWRFQTNLYGNGSTHRGREERYRLWFDPSKGYHRYSILWTQKNVIFYIDEVPIREVLRSEEMRGEYPSKPMSLYATIWDASNWATSGGKYKVNYKYAPFGADFKDLVLKGCTTDPVEEFSDIEGCADQNAHLEAQDYAQVTPIRSMKMRRFRQRFMYYSYCYDTIRYPIPPSECHFNLAEKQRFRETGRLKFGGSHRRLSRRRGRNSTPVEDTDQSDM 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05924 339 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 257 295 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
Vifa1g05924 339 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 23 224 IPR000757 GO:0004553|GO:0005975
Vifa1g05924 339 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 30 295 IPR044791 GO:0004553
Vifa1g05924 339 Gene3D - 19 295 - -
Vifa1g05924 339 ProSitePatterns Glycosyl hydrolases family 16 active sites. 109 119 IPR008263 GO:0004553|GO:0005975
Vifa1g05924 339 PIRSF EndGlu_transf 3 300 IPR016455 GO:0010411|GO:0016762|GO:0042546
Vifa1g05924 339 Pfam Glycosyl hydrolases family 16 36 216 IPR000757 GO:0004553|GO:0005975
Vifa1g05924 339 SUPERFAMILY Concanavalin A-like lectins/glucanases 32 298 IPR013320 -
Vifa1g05924 339 MobiDBLite consensus disorder prediction 315 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05924 Vifa-Chr1 929076771 929079447 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05924 1 317 Glycoside Hydrolase AT1G32170 63.722 1.98e-152 430
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05924 K08235 - gmx:100786236 557.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g05924 1 929076771 929079447 Vifa1g05924 1 929076771 929079447 ECH