Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01003 ATGGATCATAGCTTACGTTGTTTTGGGACACTACCCAAACTTTCTATTCTATTACCACTTTCTCTTCTTCTCTTCACTTTCGCCAACGCAGCCTTCGACCTCGCCACCATACCCTTCAACGACGCCTATTCTCCGCTCTTCGGAGATGCCAACGTTGTTCGCTCCGACGATGGCAACGCCGTTAAACTCCTCCTCGATCGCTTCACTGGTTCTGGTTTCATTTCCTCTAGTATGTACCAGTATGGATTCTTCAGCGCCAAAATCAAGTTGCCATCCAATTATACTGCTGGAATTTGCGTCGCCTTTTATACATCAAACGGTGACGTATTCGAGAAGGCCCACGACGAGTTGGACTTTGAATTCTTAGGAAACATCGCCGGAAAACCGTGGCGGTTTCAGACGAACTTGTACGGCAACGGAAGCACGAACCGTGGGCGTGAGGAACGTTACCGTTTGTGGTTTGATCCAACCAAAGAATACCACAGATACAGCATCCTTTGGACTGCCACGAACGTCATATTTTACATTGATGAAGTTCCAATTAGAGAAATATTACGAAGTGAGGAAATGGGAGGTGACTACCCATCCAAGCCAATGTCATTGTATGCTACCATATGGGATGCCTCGAATTGGGCCACATCCGGTGGAAAATACAAAGTTAACTATAAGTATGCACCTTTTGTGACCGAATTTAAGGACCTAGTCCTAAAGGGTTGCTCCGCCGATCCCATCCAAGAGATCTCCGGCGACGAGGCTTGCTCCGGCCAACACGCCGACCTCGAAGCGCAAGACTACGCCACCGTGACCCCCTTGCGCCGCCTCGCCATGCGACGGTTCCGCCAGCGTTACATGTACTACTCATATTGCTATGATACGTTAAGATACACCGTGCCACCACCCGAATGTGTTATTGTGCCTTCGGAGAAACAAAGGTTTAAGGAGACCGGACGGTTGAGATTTGGCGGCAGCCACCGCCGGCAATCTAGACGGAGGGGCCGTACAACAACTCCGGTGGAAGATACCGATCAGGATATGTGA 1038 0.4961 MDHSLRCFGTLPKLSILLPLSLLLFTFANAAFDLATIPFNDAYSPLFGDANVVRSDDGNAVKLLLDRFTGSGFISSSMYQYGFFSAKIKLPSNYTAGICVAFYTSNGDVFEKAHDELDFEFLGNIAGKPWRFQTNLYGNGSTNRGREERYRLWFDPTKEYHRYSILWTATNVIFYIDEVPIREILRSEEMGGDYPSKPMSLYATIWDASNWATSGGKYKVNYKYAPFVTEFKDLVLKGCSADPIQEISGDEACSGQHADLEAQDYATVTPLRRLAMRRFRQRYMYYSYCYDTLRYTVPPPECVIVPSEKQRFKETGRLRFGGSHRRQSRRRGRTTTPVEDTDQDM 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01003 345 SUPERFAMILY Concanavalin A-like lectins/glucanases 39 304 IPR013320 -
Cca06g01003 345 PIRSF EndGlu_transf 6 307 IPR016455 GO:0010411|GO:0016762|GO:0042546
Cca06g01003 345 ProSitePatterns Glycosyl hydrolases family 16 active sites. 116 126 IPR008263 GO:0004553|GO:0005975
Cca06g01003 345 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 264 302 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Cca06g01003 345 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 21 325 IPR044791 GO:0004553
Cca06g01003 345 CDD GH16_XET 35 302 IPR016455 GO:0010411|GO:0016762|GO:0042546
Cca06g01003 345 Pfam Glycosyl hydrolases family 16 42 223 IPR000757 GO:0004553|GO:0005975
Cca06g01003 345 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 21 325 - -
Cca06g01003 345 Gene3D - 26 302 - -
Cca06g01003 345 MobiDBLite consensus disorder prediction 315 345 - -
Cca06g01003 345 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 30 231 IPR000757 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01003 Cca-Chr6 23841438 23844838 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01003 20 324 Glycoside Hydrolase AT1G32170 70.261 4.66e-164 460
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01003 K08235 - gmx:100786236 613.224
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01003 06 23841438 23844838 Cca06g01003 06 23841438 23844838 ECH