LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi2g0844	ATGGGTCAGCTTCCAGTAATACGCAATTTCTCTCTCTTCTTCTTCTTCTTCGTCTCTTTCTTCTGCGCGGCCTCCTCCTTCAACCTCTCCGTCATCTCGTTTGATCAGGGCTACACCCACCTTTTCGGGGAAGGCAACCTCGTCCGCTCCTCCGACGGCAGAAGCGTCCGCCTCCTCCTCGACCGTTACACCGGGTCTGGTTTTATATCGGCCAACCTGTACAACCACGGATTCTTCAGCGCGAACATCAAGCTGCCGTCGGAGTACACGGCCGGCGTGGTGGTAGCTTTCTATACATCGAATGGAGACGTGTTCGAGAAGACGCACGATGAACTGGACTTTGAGTTCTTGGGGAACGTAAAAGGGAAGCCATGGAGGTTTCAGACGAACGTGTACGGAAATGGGAGCACAAGCCGTGGAAGGGAAGAGAGGTATCGGCTTTGGTTCGATCCAAGCAAGGAGTTTCATAGATATAGCATTCTCTGGACGGCCAAGAACATCATATTTTATGTTGATGAAGTTCCCATAAGAGAGGTGATTCGCAACGAGGCGATGGGTGGCGACTACCCATCAAAGCCAATGGCATTGTACGCGACCATATGGGATGCCTCCAACTGGGCCACTTCAGGTGGCAAATACAAAGTGGACTACAACTACGCGCCCTTCGTCTCTGAATTCTCCGATTTCGTGCTCGATGGCTGCCCTGCTGATCCACTTCAGCTAGCATCCGCCGGCGGCTGCTCCGACAAGGACGCTGAGCTCGAGAGCAATGACTATTCCGCCATCACCCCACTTCGTCGCATCTCCATGCGCAAGTTCCGCCAAAAGTACATGTACTATTCCTACTGCTACGACACCCTGCGCTACGCTACTCCCCTACCGGAGTGTGTCATCATCCCTTCCGAGAAACGTCGGTTCAAGGACACTGGGCGCTTGAAGTTTGGAGGCAGCCACAAGAAGAGCTCCAAGCGGAGGTCCCGGGTGCCGGTTGCCACCACCACCTCAGACCGCCAGGCTGCTGCATAA	1026	0.5419	MGQLPVIRNFSLFFFFFVSFFCAASSFNLSVISFDQGYTHLFGEGNLVRSSDGRSVRLLLDRYTGSGFISANLYNHGFFSANIKLPSEYTAGVVVAFYTSNGDVFEKTHDELDFEFLGNVKGKPWRFQTNVYGNGSTSRGREERYRLWFDPSKEFHRYSILWTAKNIIFYVDEVPIREVIRNEAMGGDYPSKPMALYATIWDASNWATSGGKYKVDYNYAPFVSEFSDFVLDGCPADPLQLASAGGCSDKDAELESNDYSAITPLRRISMRKFRQKYMYYSYCYDTLRYATPLPECVIIPSEKRRFKDTGRLKFGGSHKKSSKRRSRVPVATTTSDRQAAA*	342

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi2g0844	341	MobiDBLite	consensus disorder prediction	327	341	-	-
	Vvi2g0844	341	Pfam	Xyloglucan endo-transglycosylase (XET) C-terminus	260	296	IPR010713	GO:0005618\|GO:0016762\|GO:0044042\|GO:0048046
	Vvi2g0844	341	Gene3D	-	20	296	-	-
	Vvi2g0844	341	PANTHER	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED	29	296	IPR044791	GO:0004553
	Vvi2g0844	341	PIRSF	EndGlu_transf	3	301	IPR016455	GO:0010411\|GO:0016762\|GO:0042546
	Vvi2g0844	341	MobiDBLite	consensus disorder prediction	310	341	-	-
	Vvi2g0844	341	Pfam	Glycosyl hydrolases family 16	41	218	IPR000757	GO:0004553\|GO:0005975
	Vvi2g0844	341	CDD	GH16_XET	30	296	IPR016455	GO:0010411\|GO:0016762\|GO:0042546
	Vvi2g0844	341	SUPERFAMILY	Concanavalin A-like lectins/glucanases	33	298	IPR013320	-
	Vvi2g0844	341	ProSiteProfiles	Glycosyl hydrolases family 16 (GH16) domain profile.	25	226	IPR000757	GO:0004553\|GO:0005975

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi2g0844	Vvi-Chr2	9053731	9055556	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi2g0844	14	318	Glycoside Hydrolase	AT1G32170	71.429	2.56e-167	468

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi2g0844	K08235		-	vvi:100267763	670.233