Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g01972 ATGGATCATTGCCAACAAAAACTACCTTTTTCATTTTTTCTAATTATCTTTTGCTTAGCAACATTGGTTTCTTCACACAGTAGGCCTTATTCAACTCCAAGTGTCACACACTTGACTGATTCTTTTCCTCATGTCCCAATTGATAGTGCTTTTTCTAATGCTTTTGGAGCCACAAATGTCAAATTTCTTAGTCATGGGTCCATGGCCACCTTGGCTCTTGACAAAATCTCAGGCTCTGGCTTGGTCTCAAAAAATAGATACTATTATGGATTCTTTAGTGCTGCAATCAAATTACCAGCTGGTTTGTCACCTGGAGTTGTAGTTGCCTTTTATATGTCAAATGCAGATAAATTCCCTCACAACCATGATGAGATAGATATTGAAATTCTTGGTCATGACAAGAGAAATGATTGGGTAGTTCAAACAAATATCTATGCAAATGGAAGTGTCAGCACTGGAAGAGAAGAGAAATTCTATTTCTGGTTTGATCCAACACAACAGCACCATTATTATAGCATCTTGTGGAACAATTATCACACAGTGTTCTTTGTTGACAATATTCCAGTAAGAGAATTCAAACACAGCAACACACACCTTTCAATTTATCCATCAAAACCAATGTCAGTATATGCAACAATATGGGATGGTTCAGAATGGGCAACACATGGTGGAAAATACCCTGTCAATTACAAATATTCACCATTTATTGTTTCATTTGCTGAAATGGAATTAAGTGGATGCATAGCTGATCCAACAGCATCAATTTCATCATGTTCTAACTCCAATCATCCTTCACAAATTGACCCTGTTAATGGAGCAGAGTTTACTAAGCTTTCACAACAACAAATTGCAGCTATGAATTGGGCTAGAAACAAACTCATGTTTTATTCTTATTGTAATGATAGAACTAGATACAAAGTCTTACCACCAGAATGTCATTAA 942 0.3609 MDHCQQKLPFSFFLIIFCLATLVSSHSRPYSTPSVTHLTDSFPHVPIDSAFSNAFGATNVKFLSHGSMATLALDKISGSGLVSKNRYYYGFFSAAIKLPAGLSPGVVVAFYMSNADKFPHNHDEIDIEILGHDKRNDWVVQTNIYANGSVSTGREEKFYFWFDPTQQHHYYSILWNNYHTVFFVDNIPVREFKHSNTHLSIYPSKPMSVYATIWDGSEWATHGGKYPVNYKYSPFIVSFAEMELSGCIADPTASISSCSNSNHPSQIDPVNGAEFTKLSQQQIAAMNWARNKLMFYSYCNDRTRYKVLPPECH 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g01972 313 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 2 313 IPR044791 GO:0004553
Car07g01972 313 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 40 239 IPR000757 GO:0004553|GO:0005975
Car07g01972 313 PIRSF EndGlu_transf 10 313 IPR016455 GO:0010411|GO:0016762|GO:0042546
Car07g01972 313 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 276 312 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Car07g01972 313 Gene3D - 30 312 - -
Car07g01972 313 Pfam Glycosyl hydrolases family 16 52 231 IPR000757 GO:0004553|GO:0005975
Car07g01972 313 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 33-RELATED 2 313 - -
Car07g01972 313 SUPERFAMILY Concanavalin A-like lectins/glucanases 50 312 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g01972 Car-Chr7 22937822 22940041 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g01972 15 313 Glycoside Hydrolase AT1G10550 61.513 2.42e-143 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g01972 K08235 - gmx:100778993 537.724
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car07g01972 07 22937822 22940041 Car07g01972 07 22937822 22940041 ECH