Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01422 ATGGATCATAGGTTACGTTGTTTTGGGACAATACCCAAAATTCCTTTTCTATTGCTACTTTCTTCTCTGCTTCTCTTCTTCAGTTTCGTTAACGCAGCCTTCGACCTCGCTACTATACCCTTCAACGACGGCTATTCTCCGCTCTTCGGAGATAGCAACGTTGTTCGCTCCGCCGATGGCAACGGCGTACAACTCCTCCTCGATCGCTACACAGGTTCGGGTTTCATTTCTTCCAATATGTACCAGTATGGATTCTTTAGCGCGAGAATCAAGTTGCCATCGAATTATACTGCTGGTATATGTGTGGCCTTTTATACATCAAACGGTGATGTGTTCGAGAAGTCCCACGACGAGTTGGACTTTGAATTCCTAGGTAACATCGCCGGAAAACCGTGGCGGTTTCAGACGAACTTGTACGGCAACGGCAGCACCCACCGTGGCCGTGAGGAGCGCTACCGTCTGTGGTTCGATCCAACCAAAGAATTCCACAGATACAGCATCCTTTGGACAGCAAAGAACGTCATATTTTACATTGATGAAGTTCCAATTAGAGAAGTGTTACGAAGTGAGGAAATGGGAGCTGACTACCCATCAAAGGCAATGTCATTATATTCCACCATATGGGATGCATCAAATTGGGCCACATCCGGTGGAAAATACAAAGTTAACTATAAGTATGCACCTTTTGTGACCGAATTCAAGGACCTAGTCCTAAAGGGTTGCTCCGCCGATCCAATCCAAGAGGTCTCCGGCACCGAGTCTTGCTCCGGCCAACACGCCGATCTCGAGGCTCAAGACTATGCCGCCGTGACCCCCATGCGCCGCCTCGCCATGCGGCGGTTCCGCCAGCGTTACATGTACTATTCATATTGCTATGATACATTAAGGTACCCCATGCCACCACCCGAGTGTGTCATTGTACCCTCGGAGAAACAAAGGTTTAAGGAGACCGGAAGGTTGAGATTCGGTGGTAGCCACCGCCGGCAATCTCGACGGAGGGGCCGTACAACAACTCCGGTGGATGATACCGATCAGGGTGATATGTGA 1047 0.4938 MDHRLRCFGTIPKIPFLLLLSSLLLFFSFVNAAFDLATIPFNDGYSPLFGDSNVVRSADGNGVQLLLDRYTGSGFISSNMYQYGFFSARIKLPSNYTAGICVAFYTSNGDVFEKSHDELDFEFLGNIAGKPWRFQTNLYGNGSTHRGREERYRLWFDPTKEFHRYSILWTAKNVIFYIDEVPIREVLRSEEMGADYPSKAMSLYSTIWDASNWATSGGKYKVNYKYAPFVTEFKDLVLKGCSADPIQEVSGTESCSGQHADLEAQDYAAVTPMRRLAMRRFRQRYMYYSYCYDTLRYPMPPPECVIVPSEKQRFKETGRLRFGGSHRRQSRRRGRTTTPVDDTDQGDM 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01422 348 Gene3D - 28 304 - -
Pumo8g01422 348 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 267 304 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
Pumo8g01422 348 MobiDBLite consensus disorder prediction 317 348 - -
Pumo8g01422 348 CDD GH16_XET 37 304 IPR016455 GO:0010411|GO:0016762|GO:0042546
Pumo8g01422 348 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 32 233 IPR000757 GO:0004553|GO:0005975
Pumo8g01422 348 SUPERFAMILY Concanavalin A-like lectins/glucanases 41 306 IPR013320 -
Pumo8g01422 348 PIRSF EndGlu_transf 10 309 IPR016455 GO:0010411|GO:0016762|GO:0042546
Pumo8g01422 348 ProSitePatterns Glycosyl hydrolases family 16 active sites. 118 128 IPR008263 GO:0004553|GO:0005975
Pumo8g01422 348 Pfam Glycosyl hydrolases family 16 44 225 IPR000757 GO:0004553|GO:0005975
Pumo8g01422 348 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 39 304 IPR044791 GO:0004553
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01422 Pumo-Chr8 46922127 46925423 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01422 16 326 Glycoside Hydrolase AT1G32170 70.418 1.52e-165 464
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01422 K08235 - gmx:100786236 651.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g01422 8 46922127 46925423 Pumo8g01422 8 46922127 46925423 ECH