Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1063 ATGGATCGCTTACGTTGTTTCGGGATAATAATACCCCGAACTACTCATTCTGTGTCGTCTTCTTCTCTGCTTCTCTTCGTCGTCGTCTTCTTCTTCTTCTCCTTCAGCTTGAGTAACGCAGCGTTTAACCTCATCACCATACCTTTCAACGCTGGCTATTCTCCGCTATTCGGAGATGGCAACCTCGTTCGCTCCCCCGATGGCAACGGCGTCCGTCTCCTCCTCGATCGCTTCACAGGTTCGGGTTTCATCTCCTCCAATATGTACCAGTATGGATTCTTCAGCGCCAATATCAAGTTGCCATCGGATAATTCTGCTGGCGTTTGCGTCGCCTTTTATACATCGAACGGTGATGTGTTCCAGAAGACACACGACGAGTTGGACTTCGAGTTCTTAGGTAACATCGGAGGAAAACCATGGAGGTTTCAGACAAACTTATACGGCAACGGAAGCACTCATCGCGGCCGCGAGGAACGCTATCGCCTTTGGTTCGACCCAACCAAAGATTTTCACAGATACAGCATCCTTTGGACCCCCAGCAACATCATATTTTACATCGACGAAGTTCCAATAAGAGAGGTTGTTCGTAGTGAGGAAATGGGCAGTGATTACCCATCGAAGCCAATGTCATTGTATGCTACCATATGGGATGCTTCGAATTGGGCCACATCCGGTGGCAAATACAAAGTGAACTATAAGTATGCTCCTTTTGTATCAGAGTTCAAGGACCTAGTCCTCGACGGCTGCTCCGTTGATCCCATCCAAGAAGTCCCCGGCCACGATGCTTGCTCTGAGAAACATGCCGAGCTCAAAGCTCGAGACTACGCTGCCATAACCCCGGATCGCCGTCGTGCCATGCGGAGGTTCCGACAACATTACATGTACTACTCATATTGCTACGATACATTAAGGTACCCCGTACCGCCACCAGAGTGTGTTGTTGTACCCTCAGAGAAACAAAGGTTCAAAGAAACCGGCAGGTTGAAATTTGGCGGCAGTCATCGGCGACGATCCAGGAGAAGCCGAACTTCTACTCCGGTGGATGATAATGAACAGTTTTCTCCTCAACATGTGATGGTTCTTGGTTTTGAAGATTTGGAAGCAAATGCATATTTATTTGGTCTTCTCTTCTGCTCTGCCAACAACTTGACCTTGCCAGAGAAGCTTCCATGGGCTGGTTGTAATAAAGAGACACGGATTAATCTCGAAAACTCGCGAAGCTCAAGATGCATTTGGAGCCTGCGTGAAGGTCCTGCGTTATCAAGCATCGCACAAGCCACTAGAGCAACCCAAAACATAGGCTGTGATGGATTTCCTAGTGAGTGTTTATATCTATCAATTGCTTTCCCATTGTTGTGTGATGAATTGTGCGACTGCTCCCAAATCACAATGGGCATGGAAAAAAGTAAAGATTTGGTCTCCAGTTTTGCAATTGGGGATTGGAAAATTTTAGGGGAAAATGCAATTTTATTTTTCTTTTGA 1482 0.469 MDRLRCFGIIIPRTTHSVSSSSLLLFVVVFFFFSFSLSNAAFNLITIPFNAGYSPLFGDGNLVRSPDGNGVRLLLDRFTGSGFISSNMYQYGFFSANIKLPSDNSAGVCVAFYTSNGDVFQKTHDELDFEFLGNIGGKPWRFQTNLYGNGSTHRGREERYRLWFDPTKDFHRYSILWTPSNIIFYIDEVPIREVVRSEEMGSDYPSKPMSLYATIWDASNWATSGGKYKVNYKYAPFVSEFKDLVLDGCSVDPIQEVPGHDACSEKHAELKARDYAAITPDRRRAMRRFRQHYMYYSYCYDTLRYPVPPPECVVVPSEKQRFKETGRLKFGGSHRRRSRRSRTSTPVDDNEQFSPQHVMVLGFEDLEANAYLFGLLFCSANNLTLPEKLPWAGCNKETRINLENSRSSRCIWSLREGPALSSIAQATRATQNIGCDGFPSECLYLSIAFPLLCDELCDCSQITMGMEKSKDLVSSFAIGDWKILGENAILFFF 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1063 493 Gene3D - 36 312 - -
Glsi05g1063 493 CDD GH16_XET 46 305 IPR016455 GO:0010411|GO:0016762|GO:0042546
Glsi05g1063 493 MobiDBLite consensus disorder prediction 326 351 - -
Glsi05g1063 493 SUPERFAMILY Concanavalin A-like lectins/glucanases 49 314 IPR013320 -
Glsi05g1063 493 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 40 241 IPR000757 GO:0004553|GO:0005975
Glsi05g1063 493 Pfam Glycosyl hydrolases family 16 58 233 IPR000757 GO:0004553|GO:0005975
Glsi05g1063 493 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 43 312 IPR044791 GO:0004553
Glsi05g1063 493 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 277 312 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1063 Glsi-ChrGlsi05 60481300 60486007 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1063 18 334 Glycoside Hydrolase AT1G32170 70.978 4.46e-168 476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1063 05 60481300 60486007 Glsi05g1063 05 60481300 60486007 ECH