Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00119 ATGGATCATAGGTTACGTTGTTTTGTGACAATACCCAAAATTCCTTTTCTATTGCTACTTTCTCTGATTCTCGTCTTCAGTTACGTTAACGCAGCCTTCGACCTCGCTACTATACCCTTCAACGATGGCTATTCTCCGCTCTTCGGAGATAGCAACGTTGTTCGCTCCGAGGATGGCAACGGCGTACAACTCCGCCTCGATCGCTACACAGGTTCGGGTTTCATTTCCTCCAGTATGTACCAGTATGGATTCTTCAGCGCGAGAATCAAGTTGCCATCGAATTATACTGCTGGTATTTGCGTGGCCTTTTATACATCAAACGGTGATGTGTTCGAGAAGTCCCATGACGAGTTGGACTTTGAATTCCTAGGTAATGTCGCCGGAAAACCATGGCGGTTTCAGACGAACTTGTACGGCAACGGTAGCACAAAACGTGGCCGTGAGGAGCGTTACCGTCTGTGGTTCGATCCAACCAAAGAATTTCACAGATACAGCATCCTTTGGACTGCAAAGAATGTCATATTTTACATTGATGAAGTTCCAATTAGAGAAGTGTTACGAAGTGAGGAAATGGGAGGTGACTACCCATCAAAGCCAATGTCATTATACGCCACCATATGGGATGCATCAAATTGGGCTACATCCGGTGGAAAATACAAAGTGAACTATAAGTATGCACCTTTTGTGACCGAATTCAAGGACCTAGTCCTAAAGGGTTGCTCCGCCGATCCCATCCAAGAGGTTTCCGGCACCGAGTCTTGCTCCGACCAACACGCTGATCTCGAGGCTCAAGACTATGCCGCCGTAACCCCCATGCGCCGCCTCGCCATGCAGCGGTTCCGCCAGCGTTACATGTATTATTCATATTGCTATGATACATTAAGGTACCCCGTGCCACAACCCGAGTGTGTCATTGTACCCTCGGAAAAACAAAGGTTTAAGGAGACCGGAAGGTTGAAATTCGGTGGCAGCCACCGCAGGCAATCTCGACGGAGGGGCCGTACAACAACTCCGGTGGATGATACCGATCAGGGTGATATGTGA 1044 0.4828 MDHRLRCFVTIPKIPFLLLLSLILVFSYVNAAFDLATIPFNDGYSPLFGDSNVVRSEDGNGVQLRLDRYTGSGFISSSMYQYGFFSARIKLPSNYTAGICVAFYTSNGDVFEKSHDELDFEFLGNVAGKPWRFQTNLYGNGSTKRGREERYRLWFDPTKEFHRYSILWTAKNVIFYIDEVPIREVLRSEEMGGDYPSKPMSLYATIWDASNWATSGGKYKVNYKYAPFVTEFKDLVLKGCSADPIQEVSGTESCSDQHADLEAQDYAAVTPMRRLAMQRFRQRYMYYSYCYDTLRYPVPQPECVIVPSEKQRFKETGRLKFGGSHRRQSRRRGRTTTPVDDTDQGDM 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00119 347 PIRSF EndGlu_transf 5 308 IPR016455 GO:0010411|GO:0016762|GO:0042546
Gma01g00119 347 Gene3D - 26 303 - -
Gma01g00119 347 CDD GH16_XET 36 303 IPR016455 GO:0010411|GO:0016762|GO:0042546
Gma01g00119 347 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 266 303 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Gma01g00119 347 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 31 232 IPR000757 GO:0004553|GO:0005975
Gma01g00119 347 Pfam Glycosyl hydrolases family 16 44 224 IPR000757 GO:0004553|GO:0005975
Gma01g00119 347 ProSitePatterns Glycosyl hydrolases family 16 active sites. 117 127 IPR008263 GO:0004553|GO:0005975
Gma01g00119 347 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 24 326 IPR044791 GO:0004553
Gma01g00119 347 SUPERFAMILY Concanavalin A-like lectins/glucanases 40 305 IPR013320 -
Gma01g00119 347 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 24 326 - -
Gma01g00119 347 MobiDBLite consensus disorder prediction 316 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00119 Gma-Chr1 1352445 1355704 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g00119 16 325 Glycoside Hydrolase AT1G32170 70.645 7.61e-166 464
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00119 K08235 - gmx:100786236 692.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00119 01 1352445 1355704 Gma01g00119 01 1352445 1355704 ECH
Gma01g00119 01 1352445 1355704 Gma09g01937 09 44990506 44994718 GST