Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1349 ATGGGAGTGTTTTTGGTTGATGGTAATAATAGCGGCGCCGTGAGTCTCGGACGCGGTTTTAAGCCTGCCGATCCTGAGCTTAATCCTAGCGTCACATCTGGAGAAGCATTCCACTTTCGCTTCTTTACAGCTTTGACCGTCGCAAATATCAAATGTTCAATTCCCCGAACTACCCCGGCTTTTCTACCCATTTTACCAAACGTCCAAGGGCATTATTGTACACAAGAAAAATTTAAACCTGATTCAACAGAAAGCCAAAGAGGCAGAAGGAAAGATCATCCTCATCATCATCATCCTTTCTCTCCCTCGATTTCTCTTATCACCTATTATTGCGGGTCGTGTACTTTTGTGTATGTGAATAAGCTCAAGAGTCAGAGACTGAGAAAAACACAACACAGAACGTTTAAATTTAGTATGGATCGCTTACGTCGTTCTGGGATAATACCCAGAACTCCTTATTTTCTGTCGTATTGCTTCGTCTTCATGTTCTCCGTCTGCTTCCACAACGCCGCGTCGTTTAACCTCACCACCATACCCTTCGACGCCGGCTATTCTACTCTGTTCGGAGACGGCAACGTCGTTCGCTCCCCCGACGGCAACGGCGTCCGTATCCTCCTCGATCGCTTCACCGGTTCGGGTTTCATCTCCTCCAGTATGTACCAGTATGGATTCTTCAGCGCCAATATCAAATTGCCTTCGGATTACACAGCTGGCGTTTGCGTCGCTTTTTATACATCGAATGGAGATGTGTTCGAGAAGACACATGACGAGTTGGACTTCGAGTTCTTAGGAAACATCGCCGGAAAACCGTGGAGGTTTCAGACAAACTTGTACGGTAACGGAAGCACCAATCGCGGCCGCGAGGAACGTTACCGCCTCTGGTTTGACCCAACCAAAGAGTTTCACAGATACAGCATCCTTTGGACCCTCGATAACATCATATTTTACATTGACGAAGTTCCAATAAGAGAGGTACAAAGAAGTGAAGAAATGGGTGCAGATTACCCCTCAAAGCCAATGTCACTGTATGCAACCATATGGGATGCTTCAAATTGGGCCACATCAGGTGGTAAATACAAAGTGAACTACAAATATGCTCCTTTTGTATCGGACTTCAAGGACCTTGTCCTTGACGGCTGCTCCGTTGGCCCCCTCCAACGAGTCCCCTCCGGCGCTTGCTCCGAGAAACACGCTGAGCTTGAGGCCCGAGACTATGCCGTCATAACCCCGGCGCGCCGCCGTGCCATGCTCAAGTTCCGGGTGCGTTACATGTACTACTCATATTGCTATGATACGTTGAGGTACCCTGTGCCGCCGCCGGAGTGTGTCATTATACCTTCGGAGAAACTGAGGTTTAAGGAGACTGGAAGGTTGAGATTCGGCGGCAGCCACCGGCCACGGCGGTCCAGACGGGGAGGCCGTACTACAACTCCGGTGGATGAGAGAGAACAGGCTGATATGTGA 1464 0.4911 MGVFLVDGNNSGAVSLGRGFKPADPELNPSVTSGEAFHFRFFTALTVANIKCSIPRTTPAFLPILPNVQGHYCTQEKFKPDSTESQRGRRKDHPHHHHPFSPSISLITYYCGSCTFVYVNKLKSQRLRKTQHRTFKFSMDRLRRSGIIPRTPYFLSYCFVFMFSVCFHNAASFNLTTIPFDAGYSTLFGDGNVVRSPDGNGVRILLDRFTGSGFISSSMYQYGFFSANIKLPSDYTAGVCVAFYTSNGDVFEKTHDELDFEFLGNIAGKPWRFQTNLYGNGSTNRGREERYRLWFDPTKEFHRYSILWTLDNIIFYIDEVPIREVQRSEEMGADYPSKPMSLYATIWDASNWATSGGKYKVNYKYAPFVSDFKDLVLDGCSVGPLQRVPSGACSEKHAELEARDYAVITPARRRAMLKFRVRYMYYSYCYDTLRYPVPPPECVIIPSEKLRFKETGRLRFGGSHRPRRSRRGGRTTTPVDEREQADM 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1349 487 ProSitePatterns Glycosyl hydrolases family 16 active sites. 257 267 IPR008263 GO:0004553|GO:0005975
Dere09g1349 487 MobiDBLite consensus disorder prediction 459 487 - -
Dere09g1349 487 Gene3D - 165 442 - -
Dere09g1349 487 SUPERFAMILY Concanavalin A-like lectins/glucanases 180 444 IPR013320 -
Dere09g1349 487 CDD GH16_XET 176 442 IPR016455 GO:0010411|GO:0016762|GO:0042546
Dere09g1349 487 MobiDBLite consensus disorder prediction 79 98 - -
Dere09g1349 487 MobiDBLite consensus disorder prediction 473 487 - -
Dere09g1349 487 Pfam Glycosyl hydrolases family 16 184 364 IPR000757 GO:0004553|GO:0005975
Dere09g1349 487 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 172 442 IPR044791 GO:0004553
Dere09g1349 487 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 407 442 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
Dere09g1349 487 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 171 372 IPR000757 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1349 Dere-ChrDere09 17518316 17523561 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1349 156 464 Glycoside Hydrolase AT1G32170 69.677 2.93e-163 463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g1349 09 17518316 17523561 Dere09g1349 09 17518316 17523561 ECH