Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal15g0379 ATGGATCATACCCTACGTTGTTTTGGGACAACAACACCCAAAACTCATTTTCTATTTTCTCTTATTCTCTTCTTCTTATTCTTCTTCAGTTTCAGCAACTCAACCTTCGACCTTGCTACCATACCCTTCAGCGACGGTTATTCTCCACTCTTCGGAGATGCCAACGTTGTTCGCACCTCCGATGATAACGGCGTTAAACTCCTCCTCGATCGTTACACAGGTTCAGGTTTTATTTCCTCAAACATGTATCAGTATGGATTCTTCAGTGCAAATATCAAGTTGCCATCGACTTATTCTGCTGGTATCTGTGTTGCCTTTTATACATCAAACGGTGATGTGTTTGAGAAAAGACACGATGAGTTGGACTTTGAATTCTTAGGTAACATAGCCGGAAAACCATGGCGGTTTCAGACAAACTTGTACGGCAACGGTAGCACCCACCGTGGCCGAGAGGAGCGGTATCGATTATGGTTCGATCCAACCAAAGAATACCATAGATACAGCATCCTTTGGACACCCAAGAATGTCATATTTTACATTGATGAAGTTCCTATTAGAGAAGTATTACAAAGTGAGAAAATGGGAGCTGATTATCCATCTAAACCAATGTCATTATATGCTACCATATGGGACGCATCAAATTGGGCTACATCAGGTGGAAAATACAAAGTTAACTATAAGTATGCACCATTTGTAACCGAGTTTAAGGACCTAGTCCTTAAGGGTTGCTCAGTTGATCCCATCCAAGAAGGCCCCTATGGCGAGGCTTGCACCAACCAACATGCCGATCTAGAAGCTCAAGACTATGCCGCCATGACCCCTATGCGCCGCCACGCCATGCGTAGGTTCAGGCAACGTTACATGTACTACTCTTATTGTTACGATACATTGAGGTACCCTGTGGCACTACCCGAGTGCAATATTATTCCTGCAGAGCAACAAAGGTTTAAGGAGACTGGAAGGTTGAGATTCGGCGGCAGCCATCGCCGACAAGCTAGGCGAAAGGGTCGTACTACAACTCCGGTAGTTGATACTGATCAGGGTGATATGTGA 1053 0.4444 MDHTLRCFGTTTPKTHFLFSLILFFLFFFSFSNSTFDLATIPFSDGYSPLFGDANVVRTSDDNGVKLLLDRYTGSGFISSNMYQYGFFSANIKLPSTYSAGICVAFYTSNGDVFEKRHDELDFEFLGNIAGKPWRFQTNLYGNGSTHRGREERYRLWFDPTKEYHRYSILWTPKNVIFYIDEVPIREVLQSEKMGADYPSKPMSLYATIWDASNWATSGGKYKVNYKYAPFVTEFKDLVLKGCSVDPIQEGPYGEACTNQHADLEAQDYAAMTPMRRHAMRRFRQRYMYYSYCYDTLRYPVALPECNIIPAEQQRFKETGRLRFGGSHRRQARRKGRTTTPVVDTDQGDM 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal15g0379 350 CDD GH16_XET 39 306 IPR016455 GO:0010411|GO:0016762|GO:0042546
Lal15g0379 350 MobiDBLite consensus disorder prediction 323 350 - -
Lal15g0379 350 PIRSF EndGlu_transf 10 311 IPR016455 GO:0010411|GO:0016762|GO:0042546
Lal15g0379 350 SUPERFAMILY Concanavalin A-like lectins/glucanases 43 307 IPR013320 -
Lal15g0379 350 ProSitePatterns Glycosyl hydrolases family 16 active sites. 120 130 IPR008263 GO:0004553|GO:0005975
Lal15g0379 350 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 34 235 IPR000757 GO:0004553|GO:0005975
Lal15g0379 350 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 268 306 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Lal15g0379 350 Pfam Glycosyl hydrolases family 16 54 227 IPR000757 GO:0004553|GO:0005975
Lal15g0379 350 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 26 329 IPR044791 GO:0004553
Lal15g0379 350 Gene3D - 30 306 - -
Lal15g0379 350 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 26 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal15g0379 Lal-Chr15 2549745 2553109 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal15g0379 14 328 Glycoside Hydrolase AT1G32170 68.889 5.13e-167 468
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal15g0379 K08235 - gmx:100786236 596.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0379 15 2549745 2553109 Lal15g0379 15 2549745 2553109 ECH
Lal16g0435 16 2641845 2646050 Lal15g0379 15 2549745 2553109 LSH
Lal15g0379 15 2549745 2553109 Lal23g1133 23 12848948 12852388 LSH