Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g01277 ATGGATCATAGTTTACGTTGTTTCGGGACAATACCAAAAACTCATTTTCTATTTTCTGTTTCTCTTCTTTTCTTCGTCTTCACCAACGCAGCCTTCGACCTCGCGACCATACCCTTCAACGATGGCTATTCTCCACTCTTCGGAGATGGCAACCTTGTTCGTTCCTCCGATGGTAACGGCGTTCAACTCCTCCTTGATCGTTTCACCGGTTCGGGTTTCATTTCTTCCAATATGTACCAATATGGATTCTTCAGTGCGAATATCAAGTTGCCATCGAATTATTCTGCTGGAATTTGCGTGGCCTTTTATACATCAAACGGCGATGTGTTCGAGAAGACCCACGATGAGTTGGACTTTGAATTCTTAGGTAACATCGCCGGAAAACCATGGCGGTTTCAGACGAACTTGTACGGCAACGGCAGCACTCACCGTGGCCGTGAAGAACGGTATCGTTTATGGTTCGACCCTACCAAAGGATACCATAGATATAGCATTCTTTGGACCGCAAAGAACGTCATATTTTACATAGATGAAGTTCCAATTAGAGAGGTCTTAAGAAGTGAGGAAATGGGAGCTGATTATCCATCAAAGCCAATGTCATTATATGCCACCATATGGGATGCATCAAATTGGGCCACCTCAGGTGGAAAATACAAAGTTAACTATAAATATGCACCTTTTGTAACCGAATTCAAGGACCTAGTCCTTAAAGGTTGTTCCGTTGATCCCATCCAACAAGTTTCCGGCATGGCGGTTTTCTCCGACCACCAAGCCGATCTCGAAGCACAAGACTATGCTGCCGTGACCCCTCTTCGCCGCCTAGCCATGAGGAGGTTCCGGCAGCGTTACATGTACTACTCTTATTGCTATGATACATTAAGGTACCCCGTGCCACCACCTGAGTGTGTTATTGTACCCTCAGAGAGGCAAAGGTTTAAGGAGACCGGAAGGTTGAGATTTGGCGGCAGCCACCGCCGGCGATCTAGACGGGGCCGTGGCCGGACTTCAGCTTCGGTTGGTGATACTGATCAGGGTGATATGTGA 1044 0.4693 MDHSLRCFGTIPKTHFLFSVSLLFFVFTNAAFDLATIPFNDGYSPLFGDGNLVRSSDGNGVQLLLDRFTGSGFISSNMYQYGFFSANIKLPSNYSAGICVAFYTSNGDVFEKTHDELDFEFLGNIAGKPWRFQTNLYGNGSTHRGREERYRLWFDPTKGYHRYSILWTAKNVIFYIDEVPIREVLRSEEMGADYPSKPMSLYATIWDASNWATSGGKYKVNYKYAPFVTEFKDLVLKGCSVDPIQQVSGMAVFSDHQADLEAQDYAAVTPLRRLAMRRFRQRYMYYSYCYDTLRYPVPPPECVIVPSERQRFKETGRLRFGGSHRRRSRRGRGRTSASVGDTDQGDM* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g01277 347 PIRSF EndGlu_transf 5 307 IPR016455 GO:0010411|GO:0016762|GO:0042546
Rops1g01277 347 SUPERFAMILY Concanavalin A-like lectins/glucanases 39 304 IPR013320 -
Rops1g01277 347 Pfam Glycosyl hydrolases family 16 48 223 IPR000757 GO:0004553|GO:0005975
Rops1g01277 347 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 267 302 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
Rops1g01277 347 CDD GH16_XET 35 302 IPR016455 GO:0010411|GO:0016762|GO:0042546
Rops1g01277 347 Gene3D - 27 302 - -
Rops1g01277 347 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 30 231 IPR000757 GO:0004553|GO:0005975
Rops1g01277 347 MobiDBLite consensus disorder prediction 315 347 - -
Rops1g01277 347 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 37 302 IPR044791 GO:0004553
Rops1g01277 347 ProSitePatterns Glycosyl hydrolases family 16 active sites. 116 126 IPR008263 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g01277 Rops-Chr1 29161311 29164288 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g01277 17 324 Glycoside Hydrolase AT1G32170 70.227 6.57e-165 462
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g01277 K08235 - gmx:100786236 587.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g01277 1 29161311 29164288 Rops1g01277 1 29161311 29164288 ECH