Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g0123 ATGGATCATAGGTTACGTTGTTTTGTGACAATACCCAAAATTCCTTTTCTATTGCTACTTTCTCTGATTCTCGTCTTCAGTTACGTTAACGCAGCCTTCGACCTCGCTACTATACCCTTCAACGATGGCTATTCTCCGCTCTTCGGAGATAGCAACGTTGTTCGCTCCGAGGATGGCAACGGCGTACAACTCCGCCTCGATCGCTACACAGGTTCGGGTTTCATTTCCTCCAGTATGTACCAGTATGGATTCTTCAGCGCGAGAATCAAGTTGCCATCGAATTATACTGCTGGTATTTGCGTGGCCTTTTATACATCAAACGGTGATGTGTTCGAGAAGTCCCATGACGAGTTGGACTTTGAATTCTTAGGTAATGTAGCCGGAAAACCATGGCGGTTTCAGACGAACTTGTACGGCAACGGTAGCACAAAACGTGGCCGTGAGGAGCGTTACCGTCTGTGGTTCGATCCAACCAAAGAATTTCACAGATACAGCATCCTTTGGACTGCAAAGAATGTCATATTTTACATTGATGAAGTTCCAATTAGAGAAGTGTTACGAAGTGAGGAAATGGGAGGTGACTACCCATCAAAGCCAATGTCATTATACGCCACCATATGGGATGCATCAAATTGGGCTACATCCGGTGGAAAATACAAAGTGAACTATAAGTATGCACCTTTTGTGACCGAATTCAAGGACCTAGTCCTAAAGGGTTGCTCCGCCGATCCCATCCAAGAGGTTTCCGGCACCGAGTCTTGCTCCGACCAACACGCGGATCTCGAGGCTCAAGACTATGCCACCGTAACCCCCATGCGCCGCCTCGCCATGCAGCGGTTCCGCCAGCGTTACATGTATTATTCATATTGCTATGATACATTAAGGTACCCCGTGCCACAACCCGAGTGTGTCATTGTACCCTCGGAAAAACAAAGGTTTAAGGAGACCGGAAGGTTGAAATTCGGTGGCAGCCACCGCAGGCAATCTCGACGGAGGGGCCGTACAACAACTCCGGTGGATGATACCGATCAGGGTGATATGTGA 1044 0.4808 MDHRLRCFVTIPKIPFLLLLSLILVFSYVNAAFDLATIPFNDGYSPLFGDSNVVRSEDGNGVQLRLDRYTGSGFISSSMYQYGFFSARIKLPSNYTAGICVAFYTSNGDVFEKSHDELDFEFLGNVAGKPWRFQTNLYGNGSTKRGREERYRLWFDPTKEFHRYSILWTAKNVIFYIDEVPIREVLRSEEMGGDYPSKPMSLYATIWDASNWATSGGKYKVNYKYAPFVTEFKDLVLKGCSADPIQEVSGTESCSDQHADLEAQDYATVTPMRRLAMQRFRQRYMYYSYCYDTLRYPVPQPECVIVPSEKQRFKETGRLKFGGSHRRQSRRRGRTTTPVDDTDQGDM* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g0123 347 SUPERFAMILY Concanavalin A-like lectins/glucanases 40 305 IPR013320 -
Gso1g0123 347 PIRSF EndGlu_transf 5 308 IPR016455 GO:0010411|GO:0016762|GO:0042546
Gso1g0123 347 CDD GH16_XET 36 303 IPR016455 GO:0010411|GO:0016762|GO:0042546
Gso1g0123 347 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 31 232 IPR000757 GO:0004553|GO:0005975
Gso1g0123 347 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 24 326 - -
Gso1g0123 347 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 24 326 IPR044791 GO:0004553
Gso1g0123 347 Pfam Glycosyl hydrolases family 16 44 224 IPR000757 GO:0004553|GO:0005975
Gso1g0123 347 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 265 303 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Gso1g0123 347 Gene3D - 26 303 - -
Gso1g0123 347 ProSitePatterns Glycosyl hydrolases family 16 active sites. 117 127 IPR008263 GO:0004553|GO:0005975
Gso1g0123 347 MobiDBLite consensus disorder prediction 316 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g0123 Gso-Chr1 1364070 1367454 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g0123 16 325 Glycoside Hydrolase AT1G32170 70.645 6.60e-166 464
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g0123 K08235 - gmx:100786236 690.649
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0123 1 1364070 1367454 Gso1g0123 1 1364070 1367454 ECH
Gso1g0123 1 1364070 1367454 Gso9g1723 9 41666836 41670179 GST