Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g1444 ATGGATCGCTCACGTTGTTTTGGGACTCATTATTTTTTTCTCTCCTATTGCTCTTTCATATTCTTCTTCTTCACCCTCGCCTTGTTCCGCAATGCCGCGTCGTTTAACCTCACCACCACACCGTTCGACAACGCCTATTCTCCTTTGTTCGGCGACGGCAACGTCGTTCGCTCCCCTGACGGCTATGGCGTCCGTCTCCTCCTCGATCGCTTCACTGGTTCGGGTTTCATCTCCTCCAGCATGTACCAGTACGGATTATTCAGCGCAAATATCAAATTGCCTTCGGATTATACAGCTGGCGTTTGCGTCGCCTTTTACACATCGAACGGTGGATTATTCGAGAAGACTCACGACGAGTTGGATTTCGAATTCTTAGGCAATATTGCAGGAAAGCCATGGAGGTTTCAGACGAACTTGTACGGCAACGGAAGCACTCATCGTGGCCGCGAGGAGCGATACCGTCTCTGGTTTGACCCGACCAAAGAGTTTCACAGATACAGCATTCTTTGGACCCCAAACAACATCATATTTTACATTGACGAAGTACCAGTAAGAGAAGTACAAAGAAGTGAGGAAATGGGTGGTGATTACCCATCAAAGCCAATGTCCCTATATGCGACCATATGGGATGCTTCAAATTGGGCCACGTCAGGGGGTAAATACAAAGTGAACTACAAGTACGCTCCATTTGTATCAGAGTTCAAGGACCTCGTCATTGACGGTTGCTCCGTCGACCCCATCCAACAAGTCGCCGCCGATTCTTGCTTCAACCGGCACGCCCAGCTCGAAGCCCGTGACTATGCTGTGATAACTCCGACTCATCGCCGTGCCATGCGGAGGTTCCGAGAGCGTTACATGTACTACTCATACTGCTATGATACGGTGAGGTACCCTGTGGCACCGCCGGAGTGTGTTGTTATACCCTCAGAGAGACAGAGGTTTAAGGAAACGGGAAGGTTGAGGTTTGGCGGCAGCCACCGTTCGCGGCGCTCCAGGCGGGGAGGCCGTACTTCGACGCCGGTGGATGAGAATGAACAGGCTGATATGAGATGA 1053 0.509 MDRSRCFGTHYFFLSYCSFIFFFFTLALFRNAASFNLTTTPFDNAYSPLFGDGNVVRSPDGYGVRLLLDRFTGSGFISSSMYQYGLFSANIKLPSDYTAGVCVAFYTSNGGLFEKTHDELDFEFLGNIAGKPWRFQTNLYGNGSTHRGREERYRLWFDPTKEFHRYSILWTPNNIIFYIDEVPVREVQRSEEMGGDYPSKPMSLYATIWDASNWATSGGKYKVNYKYAPFVSEFKDLVIDGCSVDPIQQVAADSCFNRHAQLEARDYAVITPTHRRAMRRFRERYMYYSYCYDTVRYPVAPPECVVIPSERQRFKETGRLRFGGSHRSRRSRRGGRTSTPVDENEQADMR 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g1444 350 Pfam Glycosyl hydrolases family 16 45 226 IPR000757 GO:0004553|GO:0005975
Prci10g1444 350 CDD GH16_XET 38 304 IPR016455 GO:0010411|GO:0016762|GO:0042546
Prci10g1444 350 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 269 304 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
Prci10g1444 350 SUPERFAMILY Concanavalin A-like lectins/glucanases 42 306 IPR013320 -
Prci10g1444 350 Gene3D - 28 304 - -
Prci10g1444 350 MobiDBLite consensus disorder prediction 335 350 - -
Prci10g1444 350 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 39 304 IPR044791 GO:0004553
Prci10g1444 350 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 33 234 IPR000757 GO:0004553|GO:0005975
Prci10g1444 350 PIRSF EndGlu_transf 7 309 IPR016455 GO:0010411|GO:0016762|GO:0042546
Prci10g1444 350 MobiDBLite consensus disorder prediction 317 350 - -
Prci10g1444 350 ProSitePatterns Glycosyl hydrolases family 16 active sites. 119 129 IPR008263 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g1444 Prci-Chr10 9691393 9695860 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g1444 15 326 Glycoside Hydrolase AT1G32170 69.231 1.12e-166 466
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g1444 K08235 - gmx:100786236 516.538
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci10g1444 10 9691393 9695860 Prci10g1444 10 9691393 9695860 ECH