Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1133 ATGGATCATAGTTTACGTTGTTTTGTAACAACAACACCCAAAACTCATTTTCTCTTATCATCACTTTCTCTGTTTTTCTTCATCTTCTTCAGTTTCAGCAACGCAGCTTTCGACCTCGCCACCATACCCTTCAACGACGGCTTTTCTCCACTCTTCGGAGATGCCAACGTCGTTCGAACCTCCGATGACAACGGAGTTAAACTCCTCCTCGATCGATACACAGGTTCGGGCTTTATTTCCTCGAATATGTACAAGTATGGATTCTTCAGTGCAAATATCAAGTTGCCATCGAATTATACTGCAGGTGTTTGCATCGCTTTTTATACATCAAACGGTGATGTGTTTGAGAAAAGCCACGATGAGTTGGACTTTGAATTTTTAGGTAACATCGCCGGAAAACCATGGCGGTTCCAGACAAACTTGTATGGCAACGGTAGCACCCACCGTGGCAGGGAGGAGCGGTACCGGTTATGGTTCGACCCAACCAAAGAATACCATAGATATAGCATCCTTTGGACAGCCAAGAACATAATATTTTACATTGATGAAGTTCCAATTAGAGAAGTGTTAAGAAGTAAGGAAATGGGAGCAGATTACCCATCAAAACCAATGTCATTATATGCTACCATATGGGATGCATCAAATTGGGCCACATCAGGTGGAAGATATAAAGTTAACTATAAGTATGCACCTTTTGTAGTTGAATTCAAGGACCTAGTTCTCAAGGGATGCTACGTTGATCCCATTCAAGAAGTCTCTCATGAAGAGGCTTGTGTTGATCAGCACACTGATCTAGAAGCTCAAAGCTATGCTACCATGACCCATATGCGCCGCCATGCCATGCGTAGGTTTCGACAACGTTTCATGTACTACTCTTATTGTTATGATACATTAAGGTATCCAATGTCACCACCTGAGTGTAATATTATACCTGCGGAGCAACAAAGATTTAAGGATACTGGAAGGTTGAAATTTGGCGGTAGCCACCGTCGTCAAACTAGGCGGAAGGGTCGCACTACAACTCCAATAGATGATATCGATCATGGTGGTATGTGA 1056 0.4271 MDHSLRCFVTTTPKTHFLLSSLSLFFFIFFSFSNAAFDLATIPFNDGFSPLFGDANVVRTSDDNGVKLLLDRYTGSGFISSNMYKYGFFSANIKLPSNYTAGVCIAFYTSNGDVFEKSHDELDFEFLGNIAGKPWRFQTNLYGNGSTHRGREERYRLWFDPTKEYHRYSILWTAKNIIFYIDEVPIREVLRSKEMGADYPSKPMSLYATIWDASNWATSGGRYKVNYKYAPFVVEFKDLVLKGCYVDPIQEVSHEEACVDQHTDLEAQSYATMTHMRRHAMRRFRQRFMYYSYCYDTLRYPMSPPECNIIPAEQQRFKDTGRLKFGGSHRRQTRRKGRTTTPIDDIDHGGM 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1133 351 Pfam Glycosyl hydrolases family 16 55 228 IPR000757 GO:0004553|GO:0005975
Lal23g1133 351 ProSitePatterns Glycosyl hydrolases family 16 active sites. 121 131 IPR008263 GO:0004553|GO:0005975
Lal23g1133 351 SUPERFAMILY Concanavalin A-like lectins/glucanases 44 308 IPR013320 -
Lal23g1133 351 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 35 236 IPR000757 GO:0004553|GO:0005975
Lal23g1133 351 CDD GH16_XET 40 307 IPR016455 GO:0010411|GO:0016762|GO:0042546
Lal23g1133 351 MobiDBLite consensus disorder prediction 323 351 - -
Lal23g1133 351 PIRSF EndGlu_transf 10 312 IPR016455 GO:0010411|GO:0016762|GO:0042546
Lal23g1133 351 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 270 307 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Lal23g1133 351 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 24 330 - -
Lal23g1133 351 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 24 330 IPR044791 GO:0004553
Lal23g1133 351 MobiDBLite consensus disorder prediction 337 351 - -
Lal23g1133 351 Gene3D - 31 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1133 Lal-Chr23 12848948 12852388 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1133 24 329 Glycoside Hydrolase AT1G32170 70.261 1.92e-164 461
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1133 K08235 - gmx:100786236 584.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1133 23 12848948 12852388 Lal23g1133 23 12848948 12852388 ECH
Lal16g0435 16 2641845 2646050 Lal23g1133 23 12848948 12852388 LSH
Lal15g0379 15 2549745 2553109 Lal23g1133 23 12848948 12852388 LSH