LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco11g1299	ATGGATCGATTACGATCCTATTGGTGCTTCGTATTCTTCTTCACCGTCGTCTTGTTCCGCAACGCCGCGTCGTTTAACCTCACCACCACTCCCTTCGACGACGCCTATTCTCCTCTGTTCGGCGACGGCAACGTCGTTCGCTCTCCTGATGGCAACGGCGTCCGTCTCCTCCTCGATCGCTTCACTGGTTCGGGTTTCATCTCCTCCAGTATGTACCAGTACGGATTCTTCAGCGAGAACATCAAATTGCCTTCCGATTATACAGCTGGCATTTGCGTGGCCTTTTACACATCAAACGGTGATGTATTCGAGAAGACTCATGACGAGTTGGACTTCGAGTTCTTAGGCAATATTGCGGGAAAACCATGGCGGTTTCAGACGAACTTGTACGGCAACGGAAGCACTCATCGCGGCCGTGAGGAGCGATACCGTCTCTGGTTCGATCCAACCAAAGAGTTTCACAGATACAGCATTCTCTGGACCCCAACCAACATCATATTTTACATAGACGAAGTACCAGTAAGAGAGGTAAAGAGAAGTGAGGAAATGGGGGGTGATTACCCATCAAAGCCAATGTCACTATATACAACCATATGGGATGCTTCGAATTGGGCCACTTCAGGTGGTAAGTACAAAGTGAACTACAAATTCGCTCCTTTTGTTTCAGAGTTCAAGGACCTCGTCATTGACGGTTGCGCCGTCGACCCCATCCAACAAGTCCCCTCCGGTGCTTGCTCCGACAAGCACGCCCAGCTTGAAGCCCAAGACTATGCTGTGATAACTCCCGCACGCCGCCGTGCCATGCGGAGGTTCCGGGAGCGTTACATGTACTACTCATACTGCTATGACACGGTGAGGTACCCTGTGGCGCCGCCGGAGTGTGTTATTATACCCTCGGAGAGGCAGAGGTTTAAGGAAACCGGAAGGTTGAGATTTGGCGGCAGCCGCCGTTCGCGGCGGTCCAAGCGGGGAAGCCATACTTCAACGCCGGCGGCTGAGAGTGAACAGGCTTGA	1014	0.5237	MDRLRSYWCFVFFFTVVLFRNAASFNLTTTPFDDAYSPLFGDGNVVRSPDGNGVRLLLDRFTGSGFISSSMYQYGFFSENIKLPSDYTAGICVAFYTSNGDVFEKTHDELDFEFLGNIAGKPWRFQTNLYGNGSTHRGREERYRLWFDPTKEFHRYSILWTPTNIIFYIDEVPVREVKRSEEMGGDYPSKPMSLYTTIWDASNWATSGGKYKVNYKFAPFVSEFKDLVIDGCAVDPIQQVPSGACSDKHAQLEAQDYAVITPARRRAMRRFRERYMYYSYCYDTVRYPVAPPECVIIPSERQRFKETGRLRFGGSRRSRRSKRGSHTSTPAAESEQA	337

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco11g1299	337	PIRSF	EndGlu_transf	2	299	IPR016455	GO:0010411\|GO:0016762\|GO:0042546
	Acco11g1299	337	ProSiteProfiles	Glycosyl hydrolases family 16 (GH16) domain profile.	23	224	IPR000757	GO:0004553\|GO:0005975
	Acco11g1299	337	Gene3D	-	19	294	-	-
	Acco11g1299	337	ProSitePatterns	Glycosyl hydrolases family 16 active sites.	109	119	IPR008263	GO:0004553\|GO:0005975
	Acco11g1299	337	Pfam	Glycosyl hydrolases family 16	34	216	IPR000757	GO:0004553\|GO:0005975
	Acco11g1299	337	Pfam	Xyloglucan endo-transglycosylase (XET) C-terminus	257	294	IPR010713	GO:0005618\|GO:0016762\|GO:0044042\|GO:0048046
	Acco11g1299	337	SUPERFAMILY	Concanavalin A-like lectins/glucanases	32	296	IPR013320	-
	Acco11g1299	337	PANTHER	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED	29	294	IPR044791	GO:0004553
	Acco11g1299	337	MobiDBLite	consensus disorder prediction	306	337	-	-
	Acco11g1299	337	CDD	GH16_XET	28	294	IPR016455	GO:0010411\|GO:0016762\|GO:0042546

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco11g1299	Acco-ChrAcco11	27199020	27202065	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco11g1299	10	335	Glycoside Hydrolase	AT1G32170	68.405	4.25e-171	477

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Acco11g1299	11	27199020	27202065	Acco11g1299	11	27199020	27202065	ECH