Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01117 ATGGATCGCTTACGTTGTTTTCGGATGATGCTCAGACCCAAAACTCACGTTTTTCTATCATATTCTCTATCTCTGCTTcttatcatcatcttcttcttcagctcCACAAACGCAGCCTTCAACAACATCACCACCATACCCTTTAACGACGGCTATTCTCCGCTCTTCGGAGACGACAACGTCGTTCGCTCCCCGGATGGCAACGGCGTCCGTCTCCATCTCGATCGCTTCTCAGGTTCCGGTTTCATTTCCTCAAATATGTACCAGTACGGTTTCTTCAGCGCCAGAATCAAGTTGCCATCAGCATATACCGCTGGTATCTGTGTTGCCTTTTATACATCCAACGGCGATGTGTTTGAGAAGACCCACGACGAGTTGGACTTTGAATTCTTAGGCAATATAGCAGGGAAGCCATGGAGGTTTCAGACAAACCTGTACGGCAACGGCAGCACCCACCGTGGCCGGGAAGAGCGATACCGGCTTTGGTTCGATCCTAGCAAACAGTTTCACAGATATAGCATCCTTTGGACCGCCAAGAACATCATATTCTACATTGATGAAGTTCCAATTAGAGAAGTTACAAGAAATGAGGAAATGGGTGCTGACTACCCATCAAAGCCAATGTCACTATACGCCACCATTTGGGATGCCTCGAACTGGGCCACGTCAGGTGGCAAATACGGAGTTAACTACAAGTACGCACCTTTTGTATCAGAATTCAAGGACTTAGCCATCGAGGGTTGCTCCGCTGACCCAATCCAAGAAATCCCCGGCGGAGCTGCTTGCTCTGAGAAACTTGATAAGCTTGATGCCCAGGACTACGCCACCGTCACCCCTCGGCGCCGCCTTGCCATGCGGAGGTTCCGCCAGCGATTAATGTACTACTCGTATTGCTATGACACATTGAGGTACCCTATACCACCACCCGAATGTGTTATTGATCCATCGGAGAGGTTGAGGTTCAAGGAAACCGGTAGGTTGAAGTTTGGCGGCAGCCACCGGCGACGGTCTAAGAGGAGAGGCCGTACTTTCACTCCGGTGGTGGAAGATGATCAGGCTGATTA 1064 0.4878 MDRLRCFRMMLRPKTHVFLSYSLSLLLIIIFFFSSTNAAFNNITTIPFNDGYSPLFGDDNVVRSPDGNGVRLHLDRFSGSGFISSNMYQYGFFSARIKLPSAYTAGICVAFYTSNGDVFEKTHDELDFEFLGNIAGKPWRFQTNLYGNGSTHRGREERYRLWFDPSKQFHRYSILWTAKNIIFYIDEVPIREVTRNEEMGADYPSKPMSLYATIWDASNWATSGGKYGVNYKYAPFVSEFKDLAIEGCSADPIQEIPGGAACSEKLDKLDAQDYATVTPRRRLAMRRFRQRLMYYSYCYDTLRYPIPPPECVIDPSERLRFKETGRLKFGGSHRRRSKRRGRTFTPVVEDDQAD 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01117 354 ProSitePatterns Glycosyl hydrolases family 16 active sites. 125 135 IPR008263 GO:0004553|GO:0005975
Bva08g01117 354 Pfam Glycosyl hydrolases family 16 51 232 IPR000757 GO:0004553|GO:0005975
Bva08g01117 354 MobiDBLite consensus disorder prediction 330 354 - -
Bva08g01117 354 CDD GH16_XET 44 311 IPR016455 GO:0010411|GO:0016762|GO:0042546
Bva08g01117 354 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 38 240 IPR000757 GO:0004553|GO:0005975
Bva08g01117 354 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 274 311 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Bva08g01117 354 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 28 334 - -
Bva08g01117 354 SUPERFAMILY Concanavalin A-like lectins/glucanases 47 315 IPR013320 -
Bva08g01117 354 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 28 334 IPR044791 GO:0004553
Bva08g01117 354 Gene3D - 33 311 - -
Bva08g01117 354 PIRSF EndGlu_transf 13 316 IPR016455 GO:0010411|GO:0016762|GO:0042546
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01117 Bva-Chr8 5701196 5704434 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g01117 20 333 Glycoside Hydrolase AT1G32170 70.701 1.71e-170 476
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01117 K08235 - gmx:100786236 553.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01117 08 5701196 5704434 Bva08g01117 08 5701196 5704434 ECH