Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g01199 ATGGATCATATGTTACGTTGTGTTGGGACAATACCCAAACTTCCATTTCTTTTGCTACTTTCTCTGCTTCTCTTCAGTTTCGTTAACGCAGCCTTCGACCTCGCTACTATACCCTTCAACGATGGCTATTCTCCGCTCTTCGGAGATAGCAACGTTGTTCCCTCCGCCGATGGCTACGGCGTACAACTCCTCCTCGATCGCTTCACAGGTTCCGGTTTCATATCCTCCAATATGTACCAGTATGGATTCTTCAGCGCCAGAATCAAGTTACCATCGAATTATACTGCTGGTATTTGCGTGGCGTTCTATACATCAAACGGTGATGTGTTCGAGAAGTCACACGACGAGTTGGACTTTGAATTCCTAGGAAACATCGCCGGAAAACCGTGGCGGTTTCAGACGAACTTGTACGGCAACGGCAGCACCAACCGTGGGCGTGAGGAGCGTTATCGTTTGTGGTTCGATCCAACCAAAGAATACCACAGATACAGCATCCTTTGGACAGCCAAGAACATCATATTTTACATCGATGAAGTTCCAATCAGAGAAGTGTTACGAAGTGAGGAAATGGGAGCTGATTACCCATCCAAGCCAATGTCACTATATGCCACCATATGGGATGCATCAAATTGGGCAACCTCTGGTGGTAGATACAAAGTAAATTACAAATATGCACCTTTTGTGACCGCATTTAAAGACCTAGTCTTAAAGGGTTGCACCGCCGATCCCATCCAAGAGATCTCCGATCTCGAAGGTTGCTCCGACCAATACGCCGAGCTCGAAGCCCAAGATTACGCCGCCGTGACTCCCATGCGCCGCCTGGCCATGCGGCGGTTCCGTCAGCGTTACATGTACTATTCATATTGCTATGATACATTAAGGTACTCCATGCCACCACCCGAATGTGTCATCGTACCCTCGGAGAAACAAAGGTTTAAGGAGACCGGGAGGTTGAGATTCGGCGGCAGCCACCGCCGGCAATCACGCCGGAGGGGCCGTACAACAACTAAGATGGATAATACCGATCAGGGTGATATATGA 1041 0.487 MDHMLRCVGTIPKLPFLLLLSLLLFSFVNAAFDLATIPFNDGYSPLFGDSNVVPSADGYGVQLLLDRFTGSGFISSNMYQYGFFSARIKLPSNYTAGICVAFYTSNGDVFEKSHDELDFEFLGNIAGKPWRFQTNLYGNGSTNRGREERYRLWFDPTKEYHRYSILWTAKNIIFYIDEVPIREVLRSEEMGADYPSKPMSLYATIWDASNWATSGGRYKVNYKYAPFVTAFKDLVLKGCTADPIQEISDLEGCSDQYAELEAQDYAAVTPMRRLAMRRFRQRYMYYSYCYDTLRYSMPPPECVIVPSEKQRFKETGRLRFGGSHRRQSRRRGRTTTKMDNTDQGDI 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g01199 346 Pfam Glycosyl hydrolases family 16 43 223 IPR000757 GO:0004553|GO:0005975
Spst2g01199 346 CDD GH16_XET 35 302 IPR016455 GO:0010411|GO:0016762|GO:0042546
Spst2g01199 346 Gene3D - 26 302 - -
Spst2g01199 346 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 37 302 IPR044791 GO:0004553
Spst2g01199 346 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 267 302 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
Spst2g01199 346 SUPERFAMILY Concanavalin A-like lectins/glucanases 39 304 IPR013320 -
Spst2g01199 346 ProSitePatterns Glycosyl hydrolases family 16 active sites. 116 126 IPR008263 GO:0004553|GO:0005975
Spst2g01199 346 PIRSF EndGlu_transf 6 307 IPR016455 GO:0010411|GO:0016762|GO:0042546
Spst2g01199 346 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 30 231 IPR000757 GO:0004553|GO:0005975
Spst2g01199 346 MobiDBLite consensus disorder prediction 316 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g01199 Spst-Chr2 10601222 10604058 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g01199 16 324 Glycoside Hydrolase AT1G32170 70.000 1.50e-164 461
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g01199 K08235 - gmx:100786236 614.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g01199 2 10601222 10604058 Spst2g01199 2 10601222 10604058 ECH