Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1982 atggatcATAGGTTACGTAATTTTGGGACAATACTCAAAATTCCTTTTCTATTACTACTTTCTCTGCTTCTCTTCAGCTTTTTCGCCAACGCAGCTTTCGACCTTGCCACCATACCCTTCAACGACGGCTATTCTCCGCTCTTCGGAGATAGCAACGTTGTTCGCACCGCCGATGGCAACGGGGTACAACTCCTCCTCGATCGCTTCACTGGTTCGGGTTTCATTTCCTCCAATATGTACCAGTATGGATTCTTCAGCGCGAAAATCAAGTTGCCATCGAATTATACTGCTGGTATTTGCGTGGCCTTTTATACATCAAACGGTGATGTGTTCGAGAAGGCCCACGATGAGTTGGACTTTGAGTTCTTAGGTAACATCGCCGGAAAACCGTGGCGGTTTCAGACGAATTTGTACGGCAACGGCAGCACCCACCGTGGCCGTGAGGAGCGTTACCGTCTGTGGTTCGATCCAACCAAAGAATACCACAGATACAGCATCCTTTGGACAACCAAGAACGTCATATTTTACATTGATGAAGTTCCAATTAGAGAGGTGTTACGAAGTAAGGAAATGGGAGCTGACTACCCATCCAAGCCAATGTCATTGTACGCCACCATATGGGATGCCTCAAATTGGGCCACATCCGGCGGAAAATACAAAGTGAACTATAAGTATGCACCTTTTGTGACCGAATTCAAGGACCTAGTCCTAAAGGGTTGCTCCGCCGATCCCATCCAAGAGGTCTCCGGCGCCGAGGATTGCTCTGGCCAACACGCCGATCTCGAGGCTCAAGACTACGCCGCCGTGACCCCCTTGCGCCGCCTCGCCATGCGGCGGTTCCGCCAACGTTACATGTACTATTCTTATTGCTATGATACGTTAAGGTACCCCATGCCACCACCCGAGTGTGTTATAGTACCCTCGGAGAAACAAAGGTTTAAGGAGACCGGAAGGTTGAGATTTGGCGGCAGCCACCGCCGACAATCTAGACGGAGGGGCCGTACAACAACTCCGGTGGATGATACCGATCAGGGTGATATGTGA 1044 0.4971 MDHRLRNFGTILKIPFLLLLSLLLFSFFANAAFDLATIPFNDGYSPLFGDSNVVRTADGNGVQLLLDRFTGSGFISSNMYQYGFFSAKIKLPSNYTAGICVAFYTSNGDVFEKAHDELDFEFLGNIAGKPWRFQTNLYGNGSTHRGREERYRLWFDPTKEYHRYSILWTTKNVIFYIDEVPIREVLRSKEMGADYPSKPMSLYATIWDASNWATSGGKYKVNYKYAPFVTEFKDLVLKGCSADPIQEVSGAEDCSGQHADLEAQDYAAVTPLRRLAMRRFRQRYMYYSYCYDTLRYPMPPPECVIVPSEKQRFKETGRLRFGGSHRRQSRRRGRTTTPVDDTDQGDM 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1982 347 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 24 326 - -
Ssu2g1982 347 CDD GH16_XET 36 303 IPR016455 GO:0010411|GO:0016762|GO:0042546
Ssu2g1982 347 Pfam Glycosyl hydrolases family 16 44 224 IPR000757 GO:0004553|GO:0005975
Ssu2g1982 347 PIRSF EndGlu_transf 7 308 IPR016455 GO:0010411|GO:0016762|GO:0042546
Ssu2g1982 347 ProSitePatterns Glycosyl hydrolases family 16 active sites. 117 127 IPR008263 GO:0004553|GO:0005975
Ssu2g1982 347 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 268 303 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Ssu2g1982 347 Gene3D - 27 303 - -
Ssu2g1982 347 SUPERFAMILY Concanavalin A-like lectins/glucanases 40 305 IPR013320 -
Ssu2g1982 347 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 31 232 IPR000757 GO:0004553|GO:0005975
Ssu2g1982 347 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 24 326 IPR044791 GO:0004553
Ssu2g1982 347 MobiDBLite consensus disorder prediction 316 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1982 Ssu-Chr2 72634987 72637951 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1982 16 325 Glycoside Hydrolase AT1G32170 71.290 2.93e-168 470
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1982 K08235 - gmx:100786236 627.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1982 2 72634987 72637951 Ssu2g1982 2 72634987 72637951 ECH