Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2820 ATGGCAATTTGGCAACATAAGGTCTCATGTTGTCTACTAATACTTTGCTTTACAAATGTGTTTTCTTCACGCATTAGGCCTTACACACCTCCAAGTGTCACACGCTTGACCGATTCTTTTCCTCAAGTCTCAATTGATCGTGCTTTTTCTAAGGGTTTTGGAGCCTCAAATGTTCAATTTCTCAGTAATGGGTCCATGGCTACTCTGGCTCTTGATAAAATCTCAGGCTCTGGCTTGGTCTCGCAAAGTAGATACTCCTACGGATTCTTCAGTGCTGCAATCAAATTACCAGCTGGTTTGTCATCTGGAGTTGTAGTTGCCTTTTATTTGTCAAATGCAGATAAATTTCCTCACCACCATGATGAGATAGATATTGAACTGCTTGGTCATGACAAGAGAAATGATTGGGTTATTCAAACAAACATCTATGCCAATGGAAGTGTCGGCACAGGAAGAGAAGAGAAATTTTATCCCTGGTTCGACCCAACACAACAGCATCATTATTATAGCATCTTATGGAACAGCTATCATACAGTGTTCTTAGTGGATAATATTCCAGTGAGGGAATTCATACACAGCAGCACTTACCCTTCTATTTACCCATCAAAGCCAATGTCAGTTTATGCCACAATATGGGATGCTTCAGAATGGGCTACTAAAGGTGGAAAGTACCCAGTGAATTATAAGAATGCACCATTTGTTGTTTCATTTGCAGAAATGGAACAAAGTGGTTGTATATCTGATCCGGCGACATCAGTTTCTTTATGTTCTAAGGCCAATCCTTCTGGCCTAGACCCAAATGGAGCAGAGTTTACTAAGCTATCACAACAGCAGATAGCAGCCATGGACTGGGCAAGAAGGAAACTCATGTTTTACTCCTACTGCAATGACAAGCCTAGATTCAAAGTCTTACCACCAGAATGTCACTAA 930 0.4086 MAIWQHKVSCCLLILCFTNVFSSRIRPYTPPSVTRLTDSFPQVSIDRAFSKGFGASNVQFLSNGSMATLALDKISGSGLVSQSRYSYGFFSAAIKLPAGLSSGVVVAFYLSNADKFPHHHDEIDIELLGHDKRNDWVIQTNIYANGSVGTGREEKFYPWFDPTQQHHYYSILWNSYHTVFLVDNIPVREFIHSSTYPSIYPSKPMSVYATIWDASEWATKGGKYPVNYKNAPFVVSFAEMEQSGCISDPATSVSLCSKANPSGLDPNGAEFTKLSQQQIAAMDWARRKLMFYSYCNDKPRFKVLPPECH* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2820 309 Pfam Glycosyl hydrolases family 16 53 229 IPR000757 GO:0004553|GO:0005975
Lja4g2820 309 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 33-RELATED 6 309 - -
Lja4g2820 309 Gene3D - 28 308 - -
Lja4g2820 309 SUPERFAMILY Concanavalin A-like lectins/glucanases 53 308 IPR013320 -
Lja4g2820 309 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 6 309 IPR044791 GO:0004553
Lja4g2820 309 PIRSF EndGlu_transf 6 309 IPR016455 GO:0010411|GO:0016762|GO:0042546
Lja4g2820 309 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 33 237 IPR000757 GO:0004553|GO:0005975
Lja4g2820 309 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 272 308 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2820 Lja-Chr4 47389217 47391834 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2820 3 309 Glycoside Hydrolase AT1G10550 61.859 8.72e-141 398
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2820 K08235 - gmx:100778993 532.332
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2820 4 47389217 47391834 Lja4g2820 4 47389217 47391834 ECH