Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0802 ATGGATCATAGCTTACGTTGTTTTGGGTCGACACTACCCAAAACTCTTCTTCAGTTTCTGTTATCACCTTCACTCCTTCTCTTCATCTCCTTCTTCAGTTTCTCCAACGCAGCCTTCGACCTCGCCACCATACCCTTCAACGATGCCTATTCACCCCTCTTTGGGGATGGCAACCTTGTCCGCTCCGCCGATGGCAACGGTGTTCAACTCCTCCTCGATCGCTTCACCGGTTCTGGTTTCGTTTCTTCCAATATGTACCAGCATGGATTCTTCAGCGCCAATATCAAGCTACCATCGAATTACAGCGCTGGTATTTGCGTGGCCTTTTATACATCAAACAATGAGATGTTTGAGAAGACACACGATGAGTTAGACTTTGAATTCTTAGGTAATATAGCCGGAAAGCCTTGGAGGTTTCAGACAAACTTGTACGGCAATGGCAGCACCAACCGTGGCCGTGAGGAGCGGTACCGCCTCTGGTTTGATCCAACCAAGGGATTCCATAGATACAGCATTCTATGGACAGCTAAGAACATCATATTTTACATAGATGAGGTTCCAATTAGAGAAATTATAAGAAGTGAAGAAATGGGAGCTGATTACCCAGCAAAGCCAATGGCATTATACGCCACAATATGGGATGCATCAAATTGGGCCACATCGGGTGGAAAATACAAAGTGAACTACAAATATGCACCATTTGTGACCGAGATGAAGGACCTAGTCCTCAAGGGTTGCTCCGTTGACCCCATCCAAGAAGTTTCCGCCAGGGAGCTATGCTCCGATCAGCACGCTGACCTCGAGGAGCAAGACTACGCAGCTGTGACGCCTCTTCGCCGCCTCGCTATGCGGAGGTTTCGCCAGCGTTATATGTACTACTCTTATTGCTATGATACGTTGAGGTACTCTGTGCCGCCACCCGAGTGTGTTATTATTCCCGCGGAGAAACAAAGATTTAAGGAGACTGGGAGGTTGAGATTCGGTGGCAGCCACCGTCGACACTCTAGGGCACGGCGTAGCCGTACTTCAACTCCAGTAGATGAGTCTGATCAGGGTGATATGTGA 1065 0.4826 MDHSLRCFGSTLPKTLLQFLLSPSLLLFISFFSFSNAAFDLATIPFNDAYSPLFGDGNLVRSADGNGVQLLLDRFTGSGFVSSNMYQHGFFSANIKLPSNYSAGICVAFYTSNNEMFEKTHDELDFEFLGNIAGKPWRFQTNLYGNGSTNRGREERYRLWFDPTKGFHRYSILWTAKNIIFYIDEVPIREIIRSEEMGADYPAKPMALYATIWDASNWATSGGKYKVNYKYAPFVTEMKDLVLKGCSVDPIQEVSARELCSDQHADLEEQDYAAVTPLRRLAMRRFRQRYMYYSYCYDTLRYSVPPPECVIIPAEKQRFKETGRLRFGGSHRRHSRARRSRTSTPVDESDQGDM* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0802 354 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 28 332 IPR044791 GO:0004553
Lja2g0802 354 Gene3D - 33 309 - -
Lja2g0802 354 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 274 309 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Lja2g0802 354 SUPERFAMILY Concanavalin A-like lectins/glucanases 46 311 IPR013320 -
Lja2g0802 354 ProSitePatterns Glycosyl hydrolases family 16 active sites. 123 133 IPR008263 GO:0004553|GO:0005975
Lja2g0802 354 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 28 332 - -
Lja2g0802 354 Pfam Glycosyl hydrolases family 16 50 230 IPR000757 GO:0004553|GO:0005975
Lja2g0802 354 MobiDBLite consensus disorder prediction 323 354 - -
Lja2g0802 354 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 37 238 IPR000757 GO:0004553|GO:0005975
Lja2g0802 354 CDD GH16_XET 42 309 IPR016455 GO:0010411|GO:0016762|GO:0042546
Lja2g0802 354 PIRSF EndGlu_transf 13 314 IPR016455 GO:0010411|GO:0016762|GO:0042546
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0802 Lja-Chr2 7370335 7373486 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0802 25 331 Glycoside Hydrolase AT1G32170 70.779 3.58e-165 463
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0802 K08235 - gmx:100786236 582.408
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0802 2 7370335 7373486 Lja2g0802 2 7370335 7373486 ECH