Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g01937 ATGGATCACATTCATAGGTTACGTTGTTTTGGGACAATACCCAAAATTCCTTTTCTATTGCTACTTTCCCTGCTTCTCTTCAGTTTCGTTAACGCATCCTTCGACCTCGCTACTATACCCTTCAACGACGGCTATTCTCCGCTCTTCGGAGCTAGCAACGTTGTTCGCTCCGAGGATGGATACGGCGTACAACTCCGCCTCGATCGCTACACAGGTTCGGGTTTCATTTCCTCCAGTATGTACCAGTATGGATTCTTCAGCGCGAGAATCAAGTTACCATCGAATTATAGTGCTGGTATTTGCGTGGCCTTTTATACATCAAACGGTGATGTGTTCGAGAAGTCCCATGATGAGTTGGACTTTGAATTCCTAGGTAACGTTGCCGGAAAACCATGGCGGTTTCAGACGAACTTGTACGGCAACGGCAGCACAAATCGTGGCCGTGAGGAGCGGTACCGTCTGTGGTTCGATCCAACCAAAGAATTCCACAGATACAGCATCCTTTGGACCGCAAAGAATGTCATATTTTACATTGATGAAGTTCCAATTAGAGAAGTGCTACAAAGTGAAGAAATGGGAGGTGACTACCCATCAAAGCCAATGTCATTATACGCCACCATATGGGATGCATCAAATTGGGCCACATCCGGTGGAAAATACAAAGTGAACTATAAGTATGCACCTTTTGTGACCGAATTCAAGGACCTAGTCCTAAAGGGTTGCTCCGCCGATCCCATTCAAGAGGTTACCGGCACCAAGTCTTGCTCCGACCAACACGCCGATCTCGAGGCTCAAGACTATGCCGGCGTGACCCCCATGCGCCGCCTCACCATGCGGCGGTTCCGTCAGCGTTACATGTACTATTCATATTGCTATGATACTTTAAGGTACCCTGTGCCACAACCCGAGTGTGTCATTGTACCCTCCGAGAAACAAAGGTTTAAGGAGACCGGAAGGTTGAAATTTGGCGGCAGTCACCACCGGCAATCTCGACGGAGGGGCCGTACAACAACTCCGGTGGATCATACCGATCAGGGTGATATGTGA 1047 0.4852 MDHIHRLRCFGTIPKIPFLLLLSLLLFSFVNASFDLATIPFNDGYSPLFGASNVVRSEDGYGVQLRLDRYTGSGFISSSMYQYGFFSARIKLPSNYSAGICVAFYTSNGDVFEKSHDELDFEFLGNVAGKPWRFQTNLYGNGSTNRGREERYRLWFDPTKEFHRYSILWTAKNVIFYIDEVPIREVLQSEEMGGDYPSKPMSLYATIWDASNWATSGGKYKVNYKYAPFVTEFKDLVLKGCSADPIQEVTGTKSCSDQHADLEAQDYAGVTPMRRLTMRRFRQRYMYYSYCYDTLRYPVPQPECVIVPSEKQRFKETGRLKFGGSHHRQSRRRGRTTTPVDHTDQGDM 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g01937 348 MobiDBLite consensus disorder prediction 334 348 - -
Gma09g01937 348 ProSitePatterns Glycosyl hydrolases family 16 active sites. 118 128 IPR008263 GO:0004553|GO:0005975
Gma09g01937 348 SUPERFAMILY Concanavalin A-like lectins/glucanases 41 306 IPR013320 -
Gma09g01937 348 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 25 327 - -
Gma09g01937 348 Pfam Glycosyl hydrolases family 16 45 225 IPR000757 GO:0004553|GO:0005975
Gma09g01937 348 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 25 327 IPR044791 GO:0004553
Gma09g01937 348 PIRSF EndGlu_transf 10 309 IPR016455 GO:0010411|GO:0016762|GO:0042546
Gma09g01937 348 MobiDBLite consensus disorder prediction 318 348 - -
Gma09g01937 348 CDD GH16_XET 37 304 IPR016455 GO:0010411|GO:0016762|GO:0042546
Gma09g01937 348 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 32 233 IPR000757 GO:0004553|GO:0005975
Gma09g01937 348 Gene3D - 28 304 - -
Gma09g01937 348 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 266 304 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g01937 Gma-Chr9 44990506 44994718 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g01937 18 326 Glycoside Hydrolase AT1G32170 69.903 3.89e-164 460
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g01937 K08235 - gmx:100800720 696.427
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma09g01937 09 44990506 44994718 Gma09g01937 09 44990506 44994718 ECH
Gma01g00119 01 1352445 1355704 Gma09g01937 09 44990506 44994718 GST