Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst5g00179 ATGGATCATAATACTTTACGTCGTTTTGGGGAAATAATACCCAAAACTCATCGTAATCATAATTTTCTCTTTTCACTCTTTCTCTTCGTCTTCTTCTTCTTCTCATCACACGCAGCTTTTGACCTAGCTACCATCCCCTTCAACGATGGCTATTCTCCTCTCTTCGGAGATAGCAACGTCGTTCGCTCCGATGACGGCAACGGCGTTAACCTCCTCCTCGATCGCTTCACCGGTTCTGGCTTCATATCATCGAGTATGTACAAATATGGATTCTTCAGCGCTAACATCAAGTTGCCTTCAAATTATACAGCTGGAATTTGCGTCGCTTTTTATACATCAAATGGTGATGTGTTCGAGAAGACACACGATGAGTTGGACTTTGAATTCCTTGGTAACTTAGCGGGAAAACCGTGGCGGTTTCAGACCAACTTGTACGGCAACGGAAGCACACACCGTGGCCGTGAGGAGAGGTATCGCCTGTGGTTTGATCCTACAAAGGAATACCATAGATACAGCATCCTTTGGACTGCCAAGAATGTTGTATTTTACATTGATGAAGTTCCAATTAGAGAGGTGCTAAGAAGTGCTGAAATGGGAGCTGATTACCCATCTAAACCAATGTCATTATATGCAACAATTTGGGATGCATCAAATTGGGCCACTTCAGGTGGAAAGTACAAAGTGAACTATAAATATGCACCTTTTGTAGCCGAATTTAAAGACCTAGTCCTCAAGGGTTGCTCCGTTGACCCTATTGAAGAGTCCACCGTGGCCGGCCGAAGCATTTGCTCCGACCAACACGCCGATCTTGAGGCACAAGACTATGCTGCCGTGACCCCAAGGCGCCGCCTAGCGATGCGCCGGTTCCGGCAGCGTTACATGTACTATTCTTATTGTTATGACACATTAAGGTACCCTAATCCATTACCTGAATGTGATATTATACCATCGGAGAAACAAAGATTTAAGGAGACTGGAAGGTTGAAATTCGGCGGCAGCCACCGCCGGCAGTCTCGGCGGAAGGCCCGGACTACAACTCCGGTGGATGATGCCGATCAAGGTGATATGTGA 1071 0.4622 MDHNTLRRFGEIIPKTHRNHNFLFSLFLFVFFFFSSHAAFDLATIPFNDGYSPLFGDSNVVRSDDGNGVNLLLDRFTGSGFISSSMYKYGFFSANIKLPSNYTAGICVAFYTSNGDVFEKTHDELDFEFLGNLAGKPWRFQTNLYGNGSTHRGREERYRLWFDPTKEYHRYSILWTAKNVVFYIDEVPIREVLRSAEMGADYPSKPMSLYATIWDASNWATSGGKYKVNYKYAPFVAEFKDLVLKGCSVDPIEESTVAGRSICSDQHADLEAQDYAAVTPRRRLAMRRFRQRYMYYSYCYDTLRYPNPLPECDIIPSEKQRFKETGRLKFGGSHRRQSRRKARTTTPVDDADQGDM 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst5g00179 356 Gene3D - 34 312 - -
Arst5g00179 356 ProSitePatterns Glycosyl hydrolases family 16 active sites. 124 134 IPR008263 GO:0004553|GO:0005975
Arst5g00179 356 MobiDBLite consensus disorder prediction 325 356 - -
Arst5g00179 356 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 275 312 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
Arst5g00179 356 Pfam Glycosyl hydrolases family 16 50 231 IPR000757 GO:0004553|GO:0005975
Arst5g00179 356 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 38 239 IPR000757 GO:0004553|GO:0005975
Arst5g00179 356 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 45 312 IPR044791 GO:0004553
Arst5g00179 356 PIRSF EndGlu_transf 16 317 IPR016455 GO:0010411|GO:0016762|GO:0042546
Arst5g00179 356 SUPERFAMILY Concanavalin A-like lectins/glucanases 47 313 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst5g00179 Arst-Chr5 1655506 1660010 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst5g00179 13 334 Glycoside Hydrolase AT1G32170 68.634 5.60e-167 468
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst5g00179 K08235 - gmx:100786236 602.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst5g00179 5 1655506 1660010 Arst5g00179 5 1655506 1660010 ECH