Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0435 ATGGATCATAGATTACGTTGTTTTGGGACAACACCCAAAACTCATTTTCTATGTTCTCTTATTTTCTTCTTCTTCTTCTTCAGTTTCAGCAACGCAGCCTTCGACCTCGCCACCATACCCTTCAACGACGGATATTCTTCACTCTTCGGAGGTTCCAACGTTGTCCGCACCGCCGATGGCAACGGCGTTAACCTCCTTCTCGATCGCTACACAGGTTCGGGTTTTATTTCTTCCAACATGTACCGGTATGGATTCTTCAGTGCAAATATCAAGTTGCCATCGAATTATACTGCTGGTGTGTGCGTTGCTTTTTATACATCCAACGGTGATGTGTTTCAGAAAAGCCACGATGAGTTGGACTTCGAATTCTTAGGTAACATCGCCGGAAAACCATGGCATTTTCAGACAAACTTGTACGGCAACGGTAGCACCAACCGTGGCCGAGAGGAGCGTTACCGCTTATGGTTCGACCCAACCAAAGAATACCATAGATACAGCATCCTTTGGACAGCCAAAAACGTCATATTTTACATTGATGAGGTTCCAATTAGAGAAGTGTTACGAAATGATGAAATGGGAGCTGATTATCCATCTAAGGCAATGTCTTTATATACTACCATATGGGATGCCTCAAATTGGGCCACATCGGGTGGAAGATTCAAGGTTAATTATAAATATGCACCTTTTAAAGCTGAATTCAAGGACCTGATCCTCAAGGGTTGTCCCGTCAATCCCATCCAAGAAGTCTCAGATAGCAAAGCTTGTATCGACCAACACGTCGATCTAGAAGCTCAAGACTATGCCACCATGACCCCTATGCGTCGTCGTGCTATGCATAATTTCCGAAAGCATTTCATGTATTACTCATATTGCTTTGATACATTAAGGTACCCTACGCAAATGCCTGAGTGTATTATTATACCCGAAGAGCAGGAAAGGTTTATGGAGAATGGAAGGTCGATATTTGTTGGTAAACACCGCCGGCAAGCTAAGCGAAAGAGTCGTACTAAAACTCCACTAGATATTATCAATAAGGGCTCTATGTAA 1047 0.4327 MDHRLRCFGTTPKTHFLCSLIFFFFFFSFSNAAFDLATIPFNDGYSSLFGGSNVVRTADGNGVNLLLDRYTGSGFISSNMYRYGFFSANIKLPSNYTAGVCVAFYTSNGDVFQKSHDELDFEFLGNIAGKPWHFQTNLYGNGSTNRGREERYRLWFDPTKEYHRYSILWTAKNVIFYIDEVPIREVLRNDEMGADYPSKAMSLYTTIWDASNWATSGGRFKVNYKYAPFKAEFKDLILKGCPVNPIQEVSDSKACIDQHVDLEAQDYATMTPMRRRAMHNFRKHFMYYSYCFDTLRYPTQMPECIIIPEEQERFMENGRSIFVGKHRRQAKRKSRTKTPLDIINKGSM 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0435 348 PIRSF EndGlu_transf 10 309 IPR016455 GO:0010411|GO:0016762|GO:0042546
Lal16g0435 348 Pfam Glycosyl hydrolases family 16 45 225 IPR000757 GO:0004553|GO:0005975
Lal16g0435 348 SUPERFAMILY Concanavalin A-like lectins/glucanases 41 306 IPR013320 -
Lal16g0435 348 ProSitePatterns Glycosyl hydrolases family 16 active sites. 118 128 IPR008263 GO:0004553|GO:0005975
Lal16g0435 348 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 266 304 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Lal16g0435 348 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 24 326 IPR044791 GO:0004553
Lal16g0435 348 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 24 326 - -
Lal16g0435 348 CDD GH16_XET 37 304 IPR016455 GO:0010411|GO:0016762|GO:0042546
Lal16g0435 348 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 32 233 IPR000757 GO:0004553|GO:0005975
Lal16g0435 348 MobiDBLite consensus disorder prediction 329 348 - -
Lal16g0435 348 Gene3D - 28 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0435 Lal-Chr16 2641845 2646050 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0435 30 324 Glycoside Hydrolase AT1G32170 66.441 3.08e-149 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0435 K08235 - gmx:100786236 570.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0435 16 2641845 2646050 Lal16g0435 16 2641845 2646050 ECH
Lal16g0435 16 2641845 2646050 Lal15g0379 15 2549745 2553109 LSH
Lal16g0435 16 2641845 2646050 Lal23g1133 23 12848948 12852388 LSH