Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00550 ATGGATCATAGGTTACGTTGTGTTGGGACAATACCCAAAGTTTCATTTCTTTTTCTACTTTCTCTGCTTCTCTTCAGTTTCGTCGACGCAGCCTTCGACCTCGCTACTATACCCTTCAACGATGGTTATTCTACGCTCTTCGGAGATAGCAACGTTGTTCGCTCCGCCGATGGCTACGGCGTACAACTCCTCCTCGATCGCTTCACAGGTTCGGGTTTCATATCCTCTAATATGTACCACTATGGATTCTTCAGCGCCAGAATCAAGTTACCGTCGAATTATACTGCTGGTATTTGCGTGGCCTTTTATACATCAAACGGTGATGTGTTCGAGAAGTCACACGATGAGTTGGACTTCGAATTCCTCGGAAACATCGCCGGAAAACCGTGGCGGTTTCAGACGAACTTATACGGCAACGGGAGCACCCACCGTGGGCGTGAGGAGCGTTACCGTTTGTGGTTCGATCCAACGAAAGAATACCACAGATACAGCATCCTTTGGACAGCGAAGAACGTGATATTTTACGTTGATGAAGTTCCAATCAGAGAAGTGTTACGAAGTGAGGAAATGGGAGGTGATTACCCATCGAAGCCAATGTCACTGTATTCGACCATATGGGATGCATCAAATTGGGCAACATCTGGAGGTAAATACAAAGTAAACTATAAGTATGCACCTTTTGTCACGGAGTTTAAGGACCTAGTCCTTAAGGGTTGCTCCGCCGACCCCATCCAAGAGATCTTCGACCTCAAAGGTTGCTCCGACCAATACGCGGATCTCGAGGCTCAAGACTACGCCGCCGTCACCCCCACGCGCCGCCTGGCCATGCGCCGGTTCCGCCAGCGTTACATGTACTATTCATATTGCTATGATACATTAAGGTACAACGTGCCACCACCCGAGTGTGTCATTGTACCCTCGGAGAAACAGCGGTTTAAGGAGACCGGGAGGTTGAGATTCGGAGGCAGCCACCGCCGGCAGTCACGGCGGAAGGGCCGCACAACAACTCCGGTGGTTGATACCGATGAGGGTGATATGTGA 1041 0.4986 MDHRLRCVGTIPKVSFLFLLSLLLFSFVDAAFDLATIPFNDGYSTLFGDSNVVRSADGYGVQLLLDRFTGSGFISSNMYHYGFFSARIKLPSNYTAGICVAFYTSNGDVFEKSHDELDFEFLGNIAGKPWRFQTNLYGNGSTHRGREERYRLWFDPTKEYHRYSILWTAKNVIFYVDEVPIREVLRSEEMGGDYPSKPMSLYSTIWDASNWATSGGKYKVNYKYAPFVTEFKDLVLKGCSADPIQEIFDLKGCSDQYADLEAQDYAAVTPTRRLAMRRFRQRYMYYSYCYDTLRYNVPPPECVIVPSEKQRFKETGRLRFGGSHRRQSRRKGRTTTPVVDTDEGDM 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00550 346 SUPERFAMILY Concanavalin A-like lectins/glucanases 38 304 IPR013320 -
Phco4g00550 346 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 38 302 IPR044791 GO:0004553
Phco4g00550 346 CDD GH16_XET 35 302 IPR016455 GO:0010411|GO:0016762|GO:0042546
Phco4g00550 346 PIRSF EndGlu_transf 5 307 IPR016455 GO:0010411|GO:0016762|GO:0042546
Phco4g00550 346 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 30 231 IPR000757 GO:0004553|GO:0005975
Phco4g00550 346 Gene3D - 27 302 - -
Phco4g00550 346 Pfam Glycosyl hydrolases family 16 41 223 IPR000757 GO:0004553|GO:0005975
Phco4g00550 346 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 267 302 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
Phco4g00550 346 MobiDBLite consensus disorder prediction 317 346 - -
Phco4g00550 346 ProSitePatterns Glycosyl hydrolases family 16 active sites. 116 126 IPR008263 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00550 Phco-Chr4 4038942 4041698 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00550 4 4038942 4041698 Phco4g00550 4 4038942 4041698 ECH