Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01501 ATGAGAACGGATAGGTGGGCTAAGAGCATGGGAAGGATTTCAAGGATTGGGAGTTTTGCGATTGCTTCTTCCATTAAGGAAAACCAACAACAACCTTGTATTACCTGCACCACTTTTAACATTCTCGCTCCCATATACAAACGCATCAACCATGAGGATCCCAGTTGCCGCGAAAGCGACTACAGAGCGTATTGGTTGGCGAGGAATCACAGGATATTGGACTGGTTGTTAAATGAGAGGTCTTCCATTATCTGTCTTCAGGAATTTTGGGTTGGAAATGAAGAGCTTGTTAATTTGTATGAGAATAGACTTGGTGACGCTGGTTATGTCAGTTTCAAGCTTGGAAGGACGAACAACCGTGGGGACGGTCTTCTAATAGCAGTGCAAAAGGAGTACTTTAATATTCTAAATTATAAGGAGTTGCACTTCAATGACTTTGGTGATCGTGTGGCTCAGTTGTTACATGTTGAACTAGCTTCTCCGTTTTCACAATGGCGAAACAGTAATATTAGGCAGGAAATTTTGATTGTTAACACTCACTTGCTATTTCCCCATGATTCAACTCTATCCCTTGTAAGACTGCAGCAGGTCTACAAGATACTTCAATATGTAGAATCTTATCAGAATGATTTCCAACTCAAGCCAATGCCAATCATGCTATGCGGTGATTGGAATGGAAGCAAACGTGGACATGTCTACAAGTTCTTGAGGTCTCAGGGTTTTGTATCATCTTATGATACTGCACATCATTACACTGATGCAGATGCTCACAAGTGGGTTAGCCACCGCAATCATCGGGGAAATATATGTGCAGTTGATTTTATCTGGCTTCTAAATCCTGACAAATATCGAAAACTACTAAAAGCAAGTTGGAGTGAAGCAGTGTTTGGCATGTTCAAGTATCTACTACGGAGAGCTTCATTGACCGAGAGTGATGCATTTGCCTTTCTGAAGGCTGATAATGAAGATTGTATTACCTATTCTGGTTTCTGCGAAGCACTTAGACAGCTTAGTTTAACTGGTCATTGCCATGGATTGAATGACGAAGAGATAAAGGACTTGTGGCTCCAAGCAGATGTAGATGGAAACGGTGTTCTTGATTATAAAGAATTTCTGCAAATCTGGAGTTCAACAGCTCCAGATCAGACAGATGACAACAAGAATGAGGAGCAAGACAACGGTTCAAATGATGCACAGGAGCAAACAATAGGTTTCAGTGTGAAAAACGCAGTTCTGTTCCCTCCAGAGGTGGAGAAAGGTAGATGGCCTGAAGACTACTCTCTTTCTGATCACGCACGGCTCACTGTAGTGTTTTCGCCAATAAGAATGCCATGCTCCCACTTGATTTGCTGA 1353 0.4198 MRTDRWAKSMGRISRIGSFAIASSIKENQQQPCITCTTFNILAPIYKRINHEDPSCRESDYRAYWLARNHRILDWLLNERSSIICLQEFWVGNEELVNLYENRLGDAGYVSFKLGRTNNRGDGLLIAVQKEYFNILNYKELHFNDFGDRVAQLLHVELASPFSQWRNSNIRQEILIVNTHLLFPHDSTLSLVRLQQVYKILQYVESYQNDFQLKPMPIMLCGDWNGSKRGHVYKFLRSQGFVSSYDTAHHYTDADAHKWVSHRNHRGNICAVDFIWLLNPDKYRKLLKASWSEAVFGMFKYLLRRASLTESDAFAFLKADNEDCITYSGFCEALRQLSLTGHCHGLNDEEIKDLWLQADVDGNGVLDYKEFLQIWSSTAPDQTDDNKNEEQDNGSNDAQEQTIGFSVKNAVLFPPEVEKGRWPEDYSLSDHARLTVVFSPIRMPCSHLIC 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01501 450 SUPERFAMILY EF-hand 254 378 IPR011992 -
Pumo10g01501 450 Gene3D Endonuclease/exonuclease/phosphatase 18 443 IPR036691 -
Pumo10g01501 450 ProSiteProfiles EF-hand calcium-binding domain profile. 346 381 IPR002048 GO:0005509
Pumo10g01501 450 SUPERFAMILY DNase I-like 26 249 IPR036691 -
Pumo10g01501 450 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 14 438 - -
Pumo10g01501 450 MobiDBLite consensus disorder prediction 379 400 - -
Pumo10g01501 450 Pfam Endonuclease/Exonuclease/phosphatase family 38 243 IPR005135 GO:0003824
Pumo10g01501 450 FunFam Putative calcium-binding protein 18 442 - -
Pumo10g01501 450 ProSitePatterns EF-hand calcium-binding domain. 359 371 IPR018247 -
Pumo10g01501 450 SMART efh_1 350 378 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01501 Pumo-Chr10 19929870 19934183 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01501 11 339 EF-hand Containing Proteins AT5G54130 79.697 0.0 558
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01501 - - gmx:100779780 895.575
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01501 10 19929870 19934183 Pumo10g01501 10 19929870 19934183 ECH