Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1239 ATGAATTCATGTGCGTGTGGAAAATCCATTTTCATGATCGTCTCAGTAGCTTCAACCCCAGAACGATTCAAGAATGGAGGCATCCTGAAACAGTCTCAGAAACCTTCAGTTCACCATCAAACTCTCAGGGTTTTGGAGTGGGACAAACTCTGCCACTCCGTTTCTTCCTTCGCTTCGACTTCCTTGGGCCGTGAATCCACCTGGGCCCAGCTCTGGTCCCTAGACCAGACCTACCAAGAGAGTTTGAGACTTTTGGATGAAACCAATGCTGCTCTGGAAATCCATAAGCATGGTGGTTGCACCATGGACTTCAGCACCATTGATGCTGTTCTGGTTAAATCTGCTATCCAGCATGCTCGTAGGATGTTACCAGTGGATGGAAATGAAGCCATGGCTGTTGTGGCTCTGCTACAGCTTGCAGAAACTTTGCAGCTTAATCTCAAAGCTGCCATCAAGGAAGATGCAGATTGGTACAAACGTTTCATGCCTATTTCAGAAGTGATAATGGGGTTGGTTATAAATAGATCATTAGTTAAATTGATACAGCAAGTAGTAGATGAAGATGGCTCTGTTAAAGACTCTGCGAGCTCTGCACTGAAGCAATCACGTGATCAAGTGCGGACACTTGAGAGAAAGTTATATCAGTTGATGGACAGCTTAGTTAGGAACAATGTGAATGAAACATCCTCTCTGGAAGTGAGTAATGTTGATGGAAGATGGTGCATAAAATCAGGGGCCAATCTTACAAATTTGAAGGGTTTATTGTTGTCCAGTGGTTCAGGTGTGGGAAGCATTATAGAGCCACTCTCTGCTATTCCATTAAATGATGAGTTGCAAAAGGCAAGGGCACTTGCGGCAAAGGCTGAGGCCGACGTACTTTTAAAGTTAACAGAGAAGATGCAAATGGATCTTGAAGACATTGAAAAGTTATTGGACAGTGTCATTCAACTGGATGTGATCAATGCTCGAGCTACCTATGGCCTTTCATTTGGAGGCACTTGTCCTGATTTATTTTTAGCAGAAAACAAGAATGGATCTTCCACAGGAGCCCACTTATCAGGGCATGGAACTTCAGAAGCATCTTATCCGATTAAGAGGGAATGGACTTTGCATCTGCCAAAAGCTTATCATCCTCTATTAGTTCAACAGCATCGAGAAAATCTTCAGAAGGCCAGGAAGGATGTTAGCCTTGCTATTTCTGAACAAAGGAGGAAAAAACTGCAAGGGGAGAAATTTAATGTTAAAGAAGAAACAGATATAAATCTTTCATCTTTGGAAATGCAGGTAACTAGATTAGAACAATCTCCTCCAGTCCCTGTTGATTTTTTTATCGCTCAAAGAACCAGAGTGTTGGTTATAACTGGTCCAAATACAGGGGGCAAAACCATTTGCTTAAAGACAGTTGGACTAGCTGCCATGATGGCAAGATCAGGCCTTCATGTTTTAGCTGCTGAACCTGTACGAATCCCTTGGTTTGATTATGTTTTTGCTGATATCGGTGATGAGCAGTCACTATCCCAATCTTTGTCTACCTTCTCTGGCCATTTGAAACAAATTAGTGACATTAAAGCACAGTCAACAAATCAGTCATTGGTGCTACTAGATGAAGTTGGTGCAGGCACAAATCCCCTAGAAGGAGCGGCTCTAGGGATGTCATTGCTGGAGTCTTTTGCTGAAACTGGTGCCTTGTTGACAATAGCTACCACACATCACAGTGAACTCAAAACCCTCAAATACAGTAACGACGCCTTCGAAAATGCATGTATGGAGTTTGATGAAGTGAACTTAAAACCAACTTATAAGATCCTCTGGGGCATTCCAGGACGTTCAAATGCAATCAATATTGCTGAAAGGTTAGGAGTACCCAAGAAAGTTCTAGATAAAGCTCGCGAACAGTATGGAGCAGCTAGCGCCGAGATTAATGAGGTCATAATTGATATGGAAAGGTTCAAGCAAGAATTTCAAGAGCGTGTTAATGATGCACGATATTATCTGATGCTTTCAAGAGATCTTTATGAAAATCTATTGGTGACTAAAAGAAAGCTAATGGAACATGGCACCAATCAAAGATATGGAAAGATGAGGGAAGTATCTGAGGCTGCAGCAGTGGCACGGTCTCTCCTTCACAAGAAGGTCCGACAGCTTCGTTCATCTGCAACCCGACCTTCCCAGCCTACTGCTGCAGATAAAAGCCAACATGCATCAGCAACTAGCAACCAACATACTGCAGCAGATATCAATGAACGTCCTACTACAAGTGAGAGTAAACACCCCGCTAAAGTTGCCCAGCAATCATCATCAGAGAAGAAAAGAGTTCCCAAAGTTGGCGATATGGTGCATGTTTCTTCCCTAGGAAAGAAAGCAACAGTTTTAGAAGTGGAGTCATCTAAAGGGCAGCTCGTCGTTCAGGCTGGTAACATGAAGTTGAAATTAAAATTGACTGATGTCGAAACCTGA 2457 0.4282 MNSCACGKSIFMIVSVASTPERFKNGGILKQSQKPSVHHQTLRVLEWDKLCHSVSSFASTSLGRESTWAQLWSLDQTYQESLRLLDETNAALEIHKHGGCTMDFSTIDAVLVKSAIQHARRMLPVDGNEAMAVVALLQLAETLQLNLKAAIKEDADWYKRFMPISEVIMGLVINRSLVKLIQQVVDEDGSVKDSASSALKQSRDQVRTLERKLYQLMDSLVRNNVNETSSLEVSNVDGRWCIKSGANLTNLKGLLLSSGSGVGSIIEPLSAIPLNDELQKARALAAKAEADVLLKLTEKMQMDLEDIEKLLDSVIQLDVINARATYGLSFGGTCPDLFLAENKNGSSTGAHLSGHGTSEASYPIKREWTLHLPKAYHPLLVQQHRENLQKARKDVSLAISEQRRKKLQGEKFNVKEETDINLSSLEMQVTRLEQSPPVPVDFFIAQRTRVLVITGPNTGGKTICLKTVGLAAMMARSGLHVLAAEPVRIPWFDYVFADIGDEQSLSQSLSTFSGHLKQISDIKAQSTNQSLVLLDEVGAGTNPLEGAALGMSLLESFAETGALLTIATTHHSELKTLKYSNDAFENACMEFDEVNLKPTYKILWGIPGRSNAINIAERLGVPKKVLDKAREQYGAASAEINEVIIDMERFKQEFQERVNDARYYLMLSRDLYENLLVTKRKLMEHGTNQRYGKMREVSEAAAVARSLLHKKVRQLRSSATRPSQPTAADKSQHASATSNQHTAADINERPTTSESKHPAKVAQQSSSEKKRVPKVGDMVHVSSLGKKATVLEVESSKGQLVVQAGNMKLKLKLTDVET* 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1239 818 Coils Coil 381 405 - -
Vvi16g1239 818 MobiDBLite consensus disorder prediction 713 776 - -
Vvi16g1239 818 Coils Coil 415 435 - -
Vvi16g1239 818 FunFam Endonuclease MutS2 isoform X1 422 719 - -
Vvi16g1239 818 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 39 642 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Vvi16g1239 818 SUPERFAMILY DNA repair protein MutS, domain III 171 329 IPR036187 -
Vvi16g1239 818 SMART DNAend 45 383 IPR007696 GO:0005524|GO:0006298|GO:0030983
Vvi16g1239 818 ProSitePatterns DNA mismatch repair proteins mutS family signature. 530 546 IPR000432 GO:0005524|GO:0006298|GO:0030983
Vvi16g1239 818 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 435 634 IPR027417 -
Vvi16g1239 818 MobiDBLite consensus disorder prediction 717 749 - -
Vvi16g1239 818 Coils Coil 192 219 - -
Vvi16g1239 818 Gene3D - 365 719 IPR027417 -
Vvi16g1239 818 Pfam MutS2 and Smr-associated SH3 domain 775 816 IPR046893 -
Vvi16g1239 818 SMART mutATP5 448 634 IPR000432 GO:0005524|GO:0006298|GO:0030983
Vvi16g1239 818 Pfam MutS domain V 451 632 IPR000432 GO:0005524|GO:0006298|GO:0030983
Vvi16g1239 818 PIRSF MutS_YshD 34 818 IPR005747 GO:0004519|GO:0016887|GO:0030983|GO:0045910
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1239 - - vvi:100241843 1452.57