Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4695 ATGGGAACGGCAAGGTGGGCTAAGAGGATGGGAAGGATTTCAAGGATTGGCAGTTTTGCAATTGCTTCTTCCATTAATGATAACCAGCAACAACCTTGCATTACCTGCACTACTTTTAATATTCTTGCTCCTATTTACAAGCGAATTGACCATGAGGACCCTAGTTGCCGCGAGAGCGATTGTAAAGCGTATTGGATGGCCAGGAATCATAGGATTTTGGATTGGTTGTTGAATGAGAGATCTTCTATTATCTGTCTTCAGGAGTTTTGGGTTGGAAACGAAGAGCTTGTTAATTTGTATGAGAAGAGGCTTGGCGATGCTGGCTATGTTAGTTTCAAGCTTGGAAGGACCAACAACCGTGGGGATGGTCTTCTGATAGCTGTGCAAAAGGAATACTTCAATATTCTTAATTATAAGGAGCTGCATTTCAATGACTGTGGTGATCGTGTAGCTCAGCTGTTACATGTTGAACTGGCTTTTCCATTTTCACAGTGGCGAAGCAGTGAAATTAGGCAGGAAATTCTGATTGTTAACACTCACCTGCTATTTCCCCATGATTCTACTCTAGCCCTTGTACGACTGAACCAGGTCTACAAGATTCTTCAATATGTAGAGTCGTATCAGAATGATTTCCAACTCAAGCCAATGCCAATCATGCTATGCGGTGACTGGAATGGAAGCAAACGTGGACATGTTTACAAGTTCCTGAGGTCTCAGGGTTTTGTATCATCTTATGATACTGCACATCAGTACACTGATGCAGAAGCTGACAAGTGGGTTAGTCACCGCAATCATCGGGGAAATATATGTGCTGTTGATTTTATTTGGCTTCTGAATCCGGACAAGTATCGAAAACTGCTCAAAGCAAGTTGGAGTGAAGCAGTGTTTGGCATGTTCAAGTATCTATTGCGGAGAGCTTCACTGACAGAGAGTGATGCATTTGCTTTTCTAAAGGGCGATAATGAAGATTGTATTACTTATGCTGGTTTCTGTGAAGCACTTCGAGAGCTCAATTTAACAGGTCATTGCCATGGGTTATGTGAGCAAGAGATTAAAGACTTGTGGGTCCAAGCAGACATAGATGGAAATGGTGTTCTTGATTACAAAGAATTTCTGCAGCAAATCTGGAATTCAGCAGTTTCAGATCAGAGAGATGACAACAAGAACGCGGAACATTATGATGTTCAGGAACAAACAATTGGTTTCAGTGTAAAAAATGCGGTGTTGTTCCCTCCGGAGGTGGAGAAAGGTAGATGGCCTGAAGACTACTCCCTATCGGATCACGCGCGACTCACTGTAGTGTTCTCACCAATAAGAATGCCATGCTCCCAGTTGATTTGCTAA 1344 0.4256 MGTARWAKRMGRISRIGSFAIASSINDNQQQPCITCTTFNILAPIYKRIDHEDPSCRESDCKAYWMARNHRILDWLLNERSSIICLQEFWVGNEELVNLYEKRLGDAGYVSFKLGRTNNRGDGLLIAVQKEYFNILNYKELHFNDCGDRVAQLLHVELAFPFSQWRSSEIRQEILIVNTHLLFPHDSTLALVRLNQVYKILQYVESYQNDFQLKPMPIMLCGDWNGSKRGHVYKFLRSQGFVSSYDTAHQYTDAEADKWVSHRNHRGNICAVDFIWLLNPDKYRKLLKASWSEAVFGMFKYLLRRASLTESDAFAFLKGDNEDCITYAGFCEALRELNLTGHCHGLCEQEIKDLWVQADIDGNGVLDYKEFLQQIWNSAVSDQRDDNKNAEHYDVQEQTIGFSVKNAVLFPPEVEKGRWPEDYSLSDHARLTVVFSPIRMPCSQLIC* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4695 447 ProSitePatterns EF-hand calcium-binding domain. 359 371 IPR018247 -
Lja1g4695 447 SUPERFAMILY DNase I-like 27 247 IPR036691 -
Lja1g4695 447 PANTHER ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN 1 443 - -
Lja1g4695 447 ProSiteProfiles EF-hand calcium-binding domain profile. 346 381 IPR002048 GO:0005509
Lja1g4695 447 Gene3D Endonuclease/exonuclease/phosphatase 18 440 IPR036691 -
Lja1g4695 447 SUPERFAMILY EF-hand 262 378 IPR011992 -
Lja1g4695 447 Pfam Endonuclease/Exonuclease/phosphatase family 38 245 IPR005135 GO:0003824
Lja1g4695 447 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 1 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4695 Lja-Chr1 62064175 62068097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4695 11 339 EF-hand Containing Proteins AT5G54130 78.485 0.0 552
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4695 - - gmx:100779780 842.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4695 1 62064175 62068097 Lja1g4695 1 62064175 62068097 ECH