Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01856 atgttttcttgcGCAGTGGTTGGCAAAGCCATCTCCTTCGCCACTACCATCTCTGCTTTCCCAATTAccataaatattaacaaattcaGCAATAAACCAACTTTACTTAAGCTCAAGCAACCCTTCGCTACTTCCCCTTCTTCCATTCACTATGACAGTCTCAGAGTCCTCGAATGGGACAAGCTCTGCGACTTGGTCGCTTCCTTCGCCACCACTTCCTTGGGGCGCGAAGCCGTGAAGGCCCAGCTATGGCATTTGAGTCAAACTTATGAGGAAAGTTTGAAACTTCTTGACGAAACCAATGCGGCCGTTGAAATGCACAAGCTGGGAAGCTGCAGTTTGGACTTTGCCCACATTGATGCTGTTCTGGTAAAATCTGCAATTCAACGTGCTCGGAGAACTATACCAATGAGTGGATATGAGGCGATGACCATTATGAGTCTTCTGCAGAGTGCTGAAACCTTGCAGAATAATCTAAAAGCTGCAATTAAGGGAGACGCAGATTGGTATAACCGTTTCATGCCTCTCACAGAAGTGATACTGGAATTTGTCATAAATCGATCATTAGTTAAATTGATAGAACAAGTAATTGATGGTGATGGCTCTGTCAAGGATTCGGCGAGTCCAGCGCTGAAACATTCGCGCGAACAAGTGAGGATGCTCGAGAGAAAGATACATCAGCTAATGGAGAGCCTAATCAGGAATGAAAGGAGTGAGACGTCAATTCTTGAAGTGAATAATATTGATGGCAGATGGTGTGTAAGAGTGGATTCTGGTCAAAATACAAGTTTTCAGGGTCTCTTGTTGTCCAGTGGTTCAGGGGTAGGAAGTATTGTAGAGCCACTTTCTGCTGTGCCCTTAAATGATGAGTTGCAACGAGCAAGAGGTTTGGTGGCAAAGGCCGAGGCTGATGTGCTACTGGCATTAACAGAAAAGATGCAGCTGGACCTTGATGACATTGAAAAGATATTGAATAGCATGATTCAATTGGATGTGATCAATGCTCGGGCTcgttatggtctttcttttaagGGAACAAGTCCTAATATATTTCATCCATATGAGAAAGGGTCTTCAACTGCTGATACCTCCTTAACAGAGGACCATGCCAATGGACCATTCCCCAAAAACAGGGAATGGACATTGTATCTTCCTAAATCTTATCATCCTTTATTGCTCCAGCAGCATAGGGAAAATTTGAAGGCCAGAAAGGAGGTTGCTGAGCTGGGAAAAGACCATCCCGTACCAGTTGATTTTTTCGTAACTCAAAAAACTCGTGTTCTAATCATAACTGGTCCTAATACAGGTGGTAAAACTATATGCTTAAAGACTGTTGCATTGGCTGCTATGATGGCAAAATCAGGACTTCACATTCTTGCTTCTGAATCTGCTCAAATTCCTTGGTTTGATTCTGTTTTTGCTGATATTGGTGACGAGCAGTCCTTATCACAGTCATTGTCCACCTTCTCTGGCCACTTGAAGCAAATAAGTGATATTAAATTACATTCAACAAGGCAGTCACTCGTGCTGTTGGATGAGGTTGGTGCTGGAACGAACCCCCTCGAAGGAGCAGCACTAGGCATGGCATTATTGGAAGCTTTTGCTCAAGATGGTGCCTTATTGACAATAGCTACAACTCATCATGGCGAACTTAAAACCCTGAAATACAGTAATGAGGCCTTAGAAAATGCAAGTATGGAGTTTGATGAAGTGAATTTGAAGCCGACGTACAAGATTCTCTGGGGAGTACCAGGTCGCTCAAATGCAATCAACACAGCTGAAAGGTTGGGACTACCATCTGTACTTGTGGATACTGCTTGCAAGTTATATGGTTCTGCTAGTGCAGAGATAGATGAGGTAATAACTGATATGGAAAAGCTGAAACAAGATTATCAAGAGCTATTAGATGAGGCACAACAGCATATGATGCACTCTAGAAGTCTGTATGGTAGTTTGTTGGACACAAGAAGGAAGATATTGGAACATACTACTAGTCTGAGATTCAGGAAGATGCGAGATGTATCTGAGGCTGCAGCGATGGCTCGTTCTGTCCTTCACAAGAAAGTGAGGCAACTACAAGCGTCTTCAAGACAACCTTCACGGCCCAATATAGCTGATAAGAGCCATCAATCACCGGTGACCAAAAACCAGCATGCTTCAGCAGATAAGAGAGAACCTACCATAGCAGTGACCAAAAACCAGCGTGCTTCAGCTGATAAGAGAGAACCTACCCAATCAGCTAGAAATGCATCTGCTAAGAAAATTGTTAACCAATTCTCATCAGAGAAGACTGGGCTTCCAAAGGTTGGTGATGTGGTGCACGTCTCTTCCCTTGGAAAGAAGATGACAGTTTTAAAAGTGAATTcattcaaagaagaaattgaagttcAAGCTGGAATTATGAAGCTGAAGGTGAAAATAACAGACATTCAAAGATA 2438 0.42 MFSCAVVGKAISFATTISAFPITININKFSNKPTLLKLKQPFATSPSSIHYDSLRVLEWDKLCDLVASFATTSLGREAVKAQLWHLSQTYEESLKLLDETNAAVEMHKLGSCSLDFAHIDAVLVKSAIQRARRTIPMSGYEAMTIMSLLQSAETLQNNLKAAIKGDADWYNRFMPLTEVILEFVINRSLVKLIEQVIDGDGSVKDSASPALKHSREQVRMLERKIHQLMESLIRNERSETSILEVNNIDGRWCVRVDSGQNTSFQGLLLSSGSGVGSIVEPLSAVPLNDELQRARGLVAKAEADVLLALTEKMQLDLDDIEKILNSMIQLDVINARARYGLSFKGTSPNIFHPYEKGSSTADTSLTEDHANGPFPKNREWTLYLPKSYHPLLLQQHRENLKARKEVAELGKDHPVPVDFFVTQKTRVLIITGPNTGGKTICLKTVALAAMMAKSGLHILASESAQIPWFDSVFADIGDEQSLSQSLSTFSGHLKQISDIKLHSTRQSLVLLDEVGAGTNPLEGAALGMALLEAFAQDGALLTIATTHHGELKTLKYSNEALENASMEFDEVNLKPTYKILWGVPGRSNAINTAERLGLPSVLVDTACKLYGSASAEIDEVITDMEKLKQDYQELLDEAQQHMMHSRSLYGSLLDTRRKILEHTTSLRFRKMRDVSEAAAMARSVLHKKVRQLQASSRQPSRPNIADKSHQSPVTKNQHASADKREPTIAVTKNQRASADKREPTQSARNASAKKIVNQFSSEKTGLPKVGDVVHVSSLGKKMTVLKVNSFKEEIEVQAGIMKLKVKITDIQR 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01856 812 PIRSF MutS_YshD 47 812 IPR005747 GO:0004519|GO:0016887|GO:0030983|GO:0045910
Bva12g01856 812 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 411 611 IPR027417 -
Bva12g01856 812 SMART mutATP5 425 611 IPR000432 GO:0005524|GO:0006298|GO:0030983
Bva12g01856 812 Coils Coil 610 644 - -
Bva12g01856 812 Pfam MutS2 and Smr-associated SH3 domain 769 810 IPR046893 -
Bva12g01856 812 Coils Coil 211 231 - -
Bva12g01856 812 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS, TYPE 2 43 809 - -
Bva12g01856 812 MobiDBLite consensus disorder prediction 689 717 - -
Bva12g01856 812 ProSitePatterns DNA mismatch repair proteins mutS family signature. 507 523 IPR000432 GO:0005524|GO:0006298|GO:0030983
Bva12g01856 812 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 43 809 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Bva12g01856 812 Pfam MutS domain V 428 609 IPR000432 GO:0005524|GO:0006298|GO:0030983
Bva12g01856 812 Gene3D - 375 696 IPR027417 -
Bva12g01856 812 SUPERFAMILY DNA repair protein MutS, domain III 144 340 IPR036187 -
Bva12g01856 812 MobiDBLite consensus disorder prediction 687 753 - -
Bva12g01856 812 SMART DNAend 57 395 IPR007696 GO:0005524|GO:0006298|GO:0030983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01856 Bva-Chr12 15033490 15046948 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01856 - - aip:107606920 1033.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g01856 12 15033490 15046948 Bva12g01856 12 15033490 15046948 ECH