Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g0845 ATGTATTCCATCCACTCATCTTTTGAAGATGCCTGCCACATGTTTGACACAATGCCGCTTAAAAACTTGCATTCTTGGACTGCACTTATACGCCTTCATCTTAACATGGGGTTGTTTCAAAAAGCTTTTATGCTTTTTGAAGAATTGTTATCTGATGGGGTGAGCCAAAAATTGGATTTTTTTGTGTTTCCTGTTGTGTTGAACATTTGTTGTGGTCTTGGTGATTTGAAACTAGGTAGACAACTTCATGGGATGGTTTTGAAACTTGGGTTTGTTACTAATGTTTATGTGGGGAATGCTTTGATTGATATGTATGGTAAATGTGGGGGCTTAGGTGAGGCTAAGAAAGTTCTAGAAGGAATGCCGCGAAAGGATTGTGTCTCTTGGAATTCTATTATAACCGCATGTGCCACCAATGGGATGGTGCACGAGGCGTTGGGTCTCTTGCAAAACATGTCGTTGAGTGAGCTGGAACCCAATGTTGTTACTTGGAGTGCGGTTATTGGAGGATTTTCGAGTAATGGTTATGATGTTGAGTCAATTGAATTGTTTTCTAGAATGGTGGGAGTAGGGGTGGCACCAAATGCTCAGACGCTGGCGAGCGTTCTTCCTGCTTGTGCTAGGATGAAATGGCTTTGCTTTGGGAAAGAACTCCATGGCTACATTGTTAGACATGATTTGTTCTCTAATAGTTTTGTTGTGAATGCATTAGTGGACATGTATAGAAGGTGTGGTGATATGAAAAGTGCTTTTGAAATGTTTTCCAAGTTTGCGAGGAAAAGTGCAGCATCTTACAATACAATGATGGTTGGCTATTCAGAAAATGGTAATATCGTAAAGGCAAAGGGATTATTTGATCGGATGGAGCGAGAAGGTGTGGAGAGGGATAGAATATCGTGGAATTGTATGATATCAGGTTATGTGGATAATCTCATGCTTGATGAAGCTCTGATGTTGTTTCGAGATTTATTGATGGAAGGAATTGAACCTAATTCCTTCACTCTTGGAAGTATCCTTACTGGATGTGCTGATACAACTTCTGTTCGACAAGGGAAAGAGATACATTCGATTGCAATTGCCAAAGGTCTGCAGTCCAACAGCTTTGTCGGCGGAGCTTTGGTTGAAATGTACTGTAAATGCAATGACATTATAGCTGCTCAAATGGCATTTGATGAAATAAGTGAAAGAGATACATCAACATGGAATGTGTTGATATCTGGTTATGCACGATCTAATCAAATTGAAAAGATTGGAGAACTTCTTGACAAAATGAAAGGGGTTGGTTTTGAGCCTAATACGTATACATGGAATAGTATTTTAGCCGGCCTTACGGAAAATAAACAATATGATTCAGCAATACGATTGTTCAATGAAATGCAGGTTTCAAATTTGAGGCCTGACATATACACAGCTGGAATAATCTTAGCAGCATGCTCCAAGTTGGCGACAATCCACCGGGGAAAGCAAGTCCATGCATATTCCATTAGAGCAAGGTACGACTCCGATGTTCACATTGGAGCCGCCTTAGTAGACATGTATGCAAAATGCGGGAGTATTAAATACTGCCACGAAGTTTATAACAAGATATCAAACCCTAATCTGGTGTGCCACAATGCAATGCTCACCGCTTATGCCATGCATGGACATGGTGAAGAAGGAATTGCTATTTTTCGCAGAATGTTAACCGACAAAGTTAGACCAGACCATGTAACTTTCCTATCGGTCATTTCTTCATGTGTTCACGCAGGATCAATCGAGATTGGTTTTGAATGCTTTTATTTGATGAAAAAATACAACATCACACCCACATTAAAGCATTATACGTGCATGATAGACCTCTTGAGTCGCGCAGGGAAGCTCGCCGAAGCATATCAACTTATCAAAAACATGCCAATGGAAGCCGATTCAGTGACCTGGAGTGCTCTGCTTGGAGGTTGTTTTATTCATAAAGAAGTATCCCTAGGTGAAATTGCAGCCGAAAAGCTCATCGAATTGGAGCCGGATAACACCGGAAACTATGTTATGTTAGCAAACTTATATGCTTCTGCAGGAAGATGGCATGATCTTGCTAAAACTAGAGAGTTAATGAATGATAAGGGAATGCAAAAGAGTCCAGGATGCAGTTGGATAGAAGATAGTGATGGGATTCATGTTTTTCTTGCTAGTGATAAAAGTCACCCAAAAATTGATGAAATATATCTTACGCTAGATAATTTGACTAAGTTCATTAGAATAAAACACACAAATCAATTATAA 2256 0.398 MYSIHSSFEDACHMFDTMPLKNLHSWTALIRLHLNMGLFQKAFMLFEELLSDGVSQKLDFFVFPVVLNICCGLGDLKLGRQLHGMVLKLGFVTNVYVGNALIDMYGKCGGLGEAKKVLEGMPRKDCVSWNSIITACATNGMVHEALGLLQNMSLSELEPNVVTWSAVIGGFSSNGYDVESIELFSRMVGVGVAPNAQTLASVLPACARMKWLCFGKELHGYIVRHDLFSNSFVVNALVDMYRRCGDMKSAFEMFSKFARKSAASYNTMMVGYSENGNIVKAKGLFDRMEREGVERDRISWNCMISGYVDNLMLDEALMLFRDLLMEGIEPNSFTLGSILTGCADTTSVRQGKEIHSIAIAKGLQSNSFVGGALVEMYCKCNDIIAAQMAFDEISERDTSTWNVLISGYARSNQIEKIGELLDKMKGVGFEPNTYTWNSILAGLTENKQYDSAIRLFNEMQVSNLRPDIYTAGIILAACSKLATIHRGKQVHAYSIRARYDSDVHIGAALVDMYAKCGSIKYCHEVYNKISNPNLVCHNAMLTAYAMHGHGEEGIAIFRRMLTDKVRPDHVTFLSVISSCVHAGSIEIGFECFYLMKKYNITPTLKHYTCMIDLLSRAGKLAEAYQLIKNMPMEADSVTWSALLGGCFIHKEVSLGEIAAEKLIELEPDNTGNYVMLANLYASAGRWHDLAKTRELMNDKGMQKSPGCSWIEDSDGIHVFLASDKSHPKIDEIYLTLDNLTKFIRIKHTNQL* 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g0845 751 Pfam Pentacotripeptide-repeat region of PRORP 519 630 IPR033443 -
Psa6g0845 751 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 568 602 IPR002885 -
Psa6g0845 751 Gene3D Tetratricopeptide repeat domain 584 714 IPR011990 GO:0005515
Psa6g0845 751 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 22 56 IPR002885 -
Psa6g0845 751 TIGRFAM PPR: pentatricopeptide repeat domain 127 161 IPR002885 -
Psa6g0845 751 TIGRFAM PPR: pentatricopeptide repeat domain 264 296 IPR002885 -
Psa6g0845 751 TIGRFAM PPR: pentatricopeptide repeat domain 434 468 IPR002885 -
Psa6g0845 751 TIGRFAM PPR: pentatricopeptide repeat domain 607 632 IPR002885 -
Psa6g0845 751 TIGRFAM PPR: pentatricopeptide repeat domain 570 603 IPR002885 -
Psa6g0845 751 TIGRFAM PPR: pentatricopeptide repeat domain 162 196 IPR002885 -
Psa6g0845 751 TIGRFAM PPR: pentatricopeptide repeat domain 24 55 IPR002885 -
Psa6g0845 751 TIGRFAM PPR: pentatricopeptide repeat domain 535 568 IPR002885 -
Psa6g0845 751 TIGRFAM PPR: pentatricopeptide repeat domain 298 331 IPR002885 -
Psa6g0845 751 TIGRFAM PPR: pentatricopeptide repeat domain 400 433 IPR002885 -
Psa6g0845 751 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 432 466 IPR002885 -
Psa6g0845 751 Pfam PPR repeat family 431 479 IPR002885 -
Psa6g0845 751 Pfam PPR repeat family 296 343 IPR002885 -
Psa6g0845 751 Pfam PPR repeat family 124 172 IPR002885 -
Psa6g0845 751 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 261 295 IPR002885 -
Psa6g0845 751 Pfam PPR repeat 25 54 IPR002885 -
Psa6g0845 751 Pfam PPR repeat 399 429 IPR002885 -
Psa6g0845 751 Pfam PPR repeat 233 257 IPR002885 -
Psa6g0845 751 Pfam PPR repeat 264 293 IPR002885 -
Psa6g0845 751 Gene3D Tetratricopeptide repeat domain 65 174 IPR011990 GO:0005515
Psa6g0845 751 Gene3D Tetratricopeptide repeat domain 490 583 IPR011990 GO:0005515
Psa6g0845 751 Gene3D Tetratricopeptide repeat domain 347 489 IPR011990 GO:0005515
Psa6g0845 751 SUPERFAMILY TPR-like 8 687 IPR011990 GO:0005515
Psa6g0845 751 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 160 194 IPR002885 -
Psa6g0845 751 Pfam E+ motif 716 741 IPR046849 -
Psa6g0845 751 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 125 159 IPR002885 -
Psa6g0845 751 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 397 431 IPR002885 -
Psa6g0845 751 Pfam E motif 649 711 IPR046848 -
Psa6g0845 751 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 412 539 - -
Psa6g0845 751 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1 306 - -
Psa6g0845 751 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 537 740 - -
Psa6g0845 751 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 304 408 - -
Psa6g0845 751 Gene3D Tetratricopeptide repeat domain 1 57 IPR011990 GO:0005515
Psa6g0845 751 Gene3D Tetratricopeptide repeat domain 175 345 IPR011990 GO:0005515
Psa6g0845 751 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 533 567 IPR002885 -
Psa6g0845 751 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 296 330 IPR002885 -
Psa6g0845 751 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 304 408 - -
Psa6g0845 751 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 412 539 - -
Psa6g0845 751 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 1 306 - -
Psa6g0845 751 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 537 740 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g0845 Psa-Chr6 29725302 29727800 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g0845 1 744 Glycoside Hydrolase AT3G49170 30.226 1.40e-113 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g0845 - - ccaj:109793520 1174.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g0845 6 29725302 29727800 Psa6g0845 6 29725302 29727800 ECH