Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02202 ATGAGAACGGCTAGGTGGGCTAAGAGGATGGGAAGGATTTCAAGGATTGGAAGTTTTGCAATTGCTTCTTCCATAAATGAAAACCAGCAACAACCTTGCATTACTTGCACCACTTTCAATATTCTTGCTCCCATATACAAGCGCATAAACCATGAGGACCCGAGTTGCCGTGAGAGCGATTATAGAGCATATTGGTTGGCCCGGAATCACAGGATTTTGGATTGGTTGTTGAATGAGAGGTCTTCCATTATCTGTCTTCAGGAGTTTTGGGTTGGAAACGAAGAGCTTGTTAATTTGTATGAAAAGAGACTTGGGGATGCTGGTTATGTTAGTTTCAAGCTTGGAAGGACTAACAACCGTGGAGACGGCCTTCTGATAGCAGTGCAAAAGGAATACTTTAATATTCTCAATTATAAGGAGTTGCACTTCAATGACTGTGGTGATCGTGTAGCTCAGCTGTTGCATGTTGAACTAGCTTTACCATTTTCACAAGGGCGAAACAGTGATATTAGGCAGGAAATTCTGATTGTTAACACTCACCTGCTATTTCCTCATGATTCAACTCTTTCCCTTGTACGGCTGAAGCAGGTTTACAAGATACTTCAATATGTAGAATCTTATCAGAATGATTTCCAACTCAAGCCAATGCCAATCATGCTATGCGGTGACTGGAATGGAAGCAAACGTGGACATGTTTATAAGTTCCTGAGGTCTCAGGGTTTTGTATCATCTTATGATACCGCACATCATTACACTGATGCAGATGCTGACAAGTGGGTTAGCCACCGCAATCATCGGGGAAATATATGTGCTGTTGATTTTATTTGGCTTCTAAATCCTGACAAATATCGAAAACTACTAAAAGCAAGTTGGACTGAAGCAGTGTTTGGCATGTTCAAGTATCTATTGCGGAGAGCTTCACTGACAGAGAGTGATGCATTTGCCTTTCTAAAGGCTGATAATGAAGATTGTATTACCTATTCTGCTTTCTGTGAAGCACTTCGACAGCTCAATTTAACTGGTCATTGCTATGGGTTAAGTGATGCAGAGATAAAGGATTTGTGGCTCCAAGCAGATATTGATGGAAACGGTGTTCTTGATTATAAAGAATTTCTGCAGCAAATCTGGAACTCAACATATTCAGATCAGAGAGATGACTACAAGAATGGGGAACAGGATGAAGGTTCAAATGATGTTCAAGAACAAACAATTGGTTTTAGTGTAAAAAATGCAGTTCTATTCCCTCCAGAGGTGGAGAAAGGTAGATGGCCTGAAGACTACTCCCTTTCTGATCATGCAAGACTCACTGTAGTGTTCTCACCAATAAGAATGCCATGCTCCCAGATGATTTGCTAA 1356 0.4093 MRTARWAKRMGRISRIGSFAIASSINENQQQPCITCTTFNILAPIYKRINHEDPSCRESDYRAYWLARNHRILDWLLNERSSIICLQEFWVGNEELVNLYEKRLGDAGYVSFKLGRTNNRGDGLLIAVQKEYFNILNYKELHFNDCGDRVAQLLHVELALPFSQGRNSDIRQEILIVNTHLLFPHDSTLSLVRLKQVYKILQYVESYQNDFQLKPMPIMLCGDWNGSKRGHVYKFLRSQGFVSSYDTAHHYTDADADKWVSHRNHRGNICAVDFIWLLNPDKYRKLLKASWTEAVFGMFKYLLRRASLTESDAFAFLKADNEDCITYSAFCEALRQLNLTGHCYGLSDAEIKDLWLQADIDGNGVLDYKEFLQQIWNSTYSDQRDDYKNGEQDEGSNDVQEQTIGFSVKNAVLFPPEVEKGRWPEDYSLSDHARLTVVFSPIRMPCSQMIC* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02202 451 ProSitePatterns EF-hand calcium-binding domain. 359 371 IPR018247 -
Rops10g02202 451 Gene3D Endonuclease/exonuclease/phosphatase 18 444 IPR036691 -
Rops10g02202 451 ProSiteProfiles EF-hand calcium-binding domain profile. 346 381 IPR002048 GO:0005509
Rops10g02202 451 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 14 439 - -
Rops10g02202 451 FunFam Putative calcium-binding protein 18 443 - -
Rops10g02202 451 SUPERFAMILY EF-hand 262 379 IPR011992 -
Rops10g02202 451 Pfam Endonuclease/Exonuclease/phosphatase family 38 245 IPR005135 GO:0003824
Rops10g02202 451 SUPERFAMILY DNase I-like 26 247 IPR036691 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02202 Rops-Chr10 39564156 39568667 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02202 11 339 EF-hand Containing Proteins AT5G54130 79.394 0.0 555
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02202 - - gmx:100779780 858.596
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g02202 10 39564156 39568667 Rops10g02202 10 39564156 39568667 ECH
Rops9g01335 9 22073152 22077281 Rops10g02202 10 39564156 39568667 PCT