Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02671 ATGAGAACGGGTAAATGGGCAAAGAGTATGGGAAGAATATCAAGGATTGGAAGTTTTGCAATTGCTTCTTCCTTGAATGATAATAATCTACCACAACCTTGCATTACTTGCACCACTTTTAATATTCTTGCTCCCATTTATAAACGTCTCAATGATGAGGACCCGACTTGTCGAGAGAGTGATTACCGAGCATATTGGTTGGCGAGGAATCATAGGATTTTGGATTGGCTCTTAAACGAAAAATCTTCCATTATTTGTCTTCAGGAGTTTTGGGTTGGAAATGAAGAGCTTGTTAATTTGTATGAGAAGAGACTCAAAGATGCTGGTTATGTTAGTTTCAAACTCGGAAGGACTAATAACCGCGGAGATGGTCTTCTAATAGCAGTGCAAACAGAATACTTTAATATTCTTAATTATAAGGAGTTGCACTTCAACGACTGTGGCGATCGCGTAGCTCAGTTGTTACATGTTGAATTAGTTTTTCCATTTTCAAAAGGGCGGAATAGTGAAATTAGACAGGAAATTCTTATTGTTAACACTCACCTTCTGTTTCCTCATGATGCAACACTATCTCTTGTACGACTGAAACAGGTTTATAAGATACTTCAATATGTAGAATCTTATCAGAATGATTTCCAACTCAAGCCAATGCCAATCATGTTATGCGGCGACTGGAATGGAAGCAAACGTGGACACGTTTACAAGTTCTTAAGGTCTCAAGGTTTTGTATCGTCTTATGATACTGCACATCAGTACACTGATGCAGAAGCTGACAAGTGGGTTAGTCACCGAAATCATCGAGGAAATATATGTGCTGTTGATTTTATCTGGCTTCTAAATCCTGACAAATATCGAAAATTGTTAAATGCAAGTTGGAGTGAAGCAGTGTTCGCCATGTTCAAGTATCTATTGCGGAGAGCTTCACTGACAGAGAGTGATGCATTCGCATTTCTAAGGGCCGATAATGAAGATTGTATTACCTATTCTGGTTTCTGTGAAGCACTTCGCCAGCTCAATTTAATAGGCCATTGCCATGGGTTGAGTGAGGAAGAGATAAAGGAATTATGGGTCCAAGCTGACATAGATGGAAATGGTGTTCTTGACTATAAAGAATTTCTGCAGCAAATATGGATTTCGTCGGTTTTAGATCAGATAGACGAAAACAAGAATAGGGAGCAAGAGGACAGTTCAAATGATGTTCAAGAACATACAATCGGTTTTAGTGTAAAAAATGCAGTTTTGTTCCCTCCTGAGGTGGAGAAAGGTAGATGGCCGGACGACTACTCCCTTTCTGATCATGCTCGACTTACCGTTGTGTTTTCGCCGATAAGAATGCCGTGCTCTCAGATGATTTGCTGA 1359 0.3959 MRTGKWAKSMGRISRIGSFAIASSLNDNNLPQPCITCTTFNILAPIYKRLNDEDPTCRESDYRAYWLARNHRILDWLLNEKSSIICLQEFWVGNEELVNLYEKRLKDAGYVSFKLGRTNNRGDGLLIAVQTEYFNILNYKELHFNDCGDRVAQLLHVELVFPFSKGRNSEIRQEILIVNTHLLFPHDATLSLVRLKQVYKILQYVESYQNDFQLKPMPIMLCGDWNGSKRGHVYKFLRSQGFVSSYDTAHQYTDAEADKWVSHRNHRGNICAVDFIWLLNPDKYRKLLNASWSEAVFAMFKYLLRRASLTESDAFAFLRADNEDCITYSGFCEALRQLNLIGHCHGLSEEEIKELWVQADIDGNGVLDYKEFLQQIWISSVLDQIDENKNREQEDSSNDVQEHTIGFSVKNAVLFPPEVEKGRWPDDYSLSDHARLTVVFSPIRMPCSQMIC 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02671 452 CDD EFh 313 376 IPR002048 GO:0005509
Vivi3g02671 452 ProSitePatterns EF-hand calcium-binding domain. 360 372 IPR018247 -
Vivi3g02671 452 Gene3D - 309 375 - -
Vivi3g02671 452 Gene3D Endonuclease/exonuclease/phosphatase 19 445 IPR036691 -
Vivi3g02671 452 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 31 440 - -
Vivi3g02671 452 ProSiteProfiles EF-hand calcium-binding domain profile. 347 382 IPR002048 GO:0005509
Vivi3g02671 452 SUPERFAMILY DNase I-like 33 249 IPR036691 -
Vivi3g02671 452 FunFam Putative calcium-binding protein 18 444 - -
Vivi3g02671 452 Pfam Endonuclease/Exonuclease/phosphatase family 39 246 IPR005135 GO:0003824
Vivi3g02671 452 SUPERFAMILY EF-hand 263 377 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02671 Vivi-Chr3 44721315 44724342 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02671 11 341 EF-hand Containing Proteins AT5G54130 76.205 0.0 534
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02671 - - gmx:100779780 828.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g02671 3 44721315 44724342 Vivi3g02671 3 44721315 44724342 ECH
Vivi7g01393 7 69246922 69250308 Vivi3g02671 3 44721315 44724342 PCT