Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1246 ATGGCGAGAGAGAAGAGAATGAAGAAAGGAAGGGTATCAAGGATTGGGAACTATGCCATAGCCTCCTCCTTAAGGGATCACCACCACCACCCTTGTATTTCCTGCACAACCTTCAACATCCTTGCTCCTATATACAAGCGTCTCAACCATGAGGATACCAACTGCAGGGAAAGCGATTGCAGAACATATTGGCTCAGCAGGAACCGGGCAATATTGGATTGGTTGATAGATGAAAGATCTTCCATTATTTGTCTCCAGGAATTCTGGGTTGGGAATGAAGAGCTTGTAAATTTGTATGAGAAGAGACTAGGCGATGCCGGCTATATCAATTTCAAACTTGCCCGGACGAACAACAGAGGAGATGGGTTGCTGACTTCTGTTCATAAGGACTATTTTAGAGTTCTGAACCATAGGGCGTTGCTCTTCAACGACTTTGGAGATCGCGTTGCTCAGCTGCTACATGTTGAATTAGTTGCCCCTTTTCCACATTGCAGAAGCAGCAACACCCACCAAGAAATTCTGATAGTGAACACCCACTTGCTCTTTCCTCATGATTCTACTTTGTGTATAATTCGGTTGCAACAGGTTTACAAAATTCTGCAATATGTGGAGTCCTATCAGAAGGAAAACAAGCTTAATCCCATGCCCATCATACTCTGCGGTGACTGGAATGGCAGCAAGAGTGGGCATGTTTACAAGTTCCTTAGATCCCAAGGCTTTGTGTCATCATATGATACTGCCCATCAATACACTGATGCAGATGAACATAAGTGGGTTAGCCACCGCAATCATCGAGGAAACATCTGTGGTGTAGATTTTATATGGCTTCTTAATCCAAATAGATACCGAAAACTACTGAAGACAAGTTGGAGTGAGGCAGTATTTGGCATGTTCAAGTATCTTCTACGAAGAGCTTCGCTGACAGAAGATGATGCTTTTGCCTTTTTGAAGGCTGATAATCATGGTGATTGCATTACCTATTCAGGCTTCTGTGAAGCACTTCGACAGCTTAATTTAACAGGCCATTGCCATGGACTGAGCGATGAAGAGATAAATGACCTCTGGGTCCAAGCAGACATAGATGGAAATGGTGTTCTTGATTATAAGGAATTTCAGAAGCGAATTTGGAATCCAACATGGTCACAGCAAAGAGATGAAAATATCAACGAGGCCTGGGATGAAGTTATGAAGGGTCCCAAGGAGCAAGCCATTGGTTTTAGTGTGAAGAATGCAGTTCTCTTCCCCTCTGAAGTGGAGAAAGGAATGTGGCCTGAGAACTATTCTCTTTCTGATCATGCTCGACTCACTGTGGTATTCTCACCAGTAAGGATGCCCTGCGCTCAGATTACATTCTGA 1356 0.4373 MAREKRMKKGRVSRIGNYAIASSLRDHHHHPCISCTTFNILAPIYKRLNHEDTNCRESDCRTYWLSRNRAILDWLIDERSSIICLQEFWVGNEELVNLYEKRLGDAGYINFKLARTNNRGDGLLTSVHKDYFRVLNHRALLFNDFGDRVAQLLHVELVAPFPHCRSSNTHQEILIVNTHLLFPHDSTLCIIRLQQVYKILQYVESYQKENKLNPMPIILCGDWNGSKSGHVYKFLRSQGFVSSYDTAHQYTDADEHKWVSHRNHRGNICGVDFIWLLNPNRYRKLLKTSWSEAVFGMFKYLLRRASLTEDDAFAFLKADNHGDCITYSGFCEALRQLNLTGHCHGLSDEEINDLWVQADIDGNGVLDYKEFQKRIWNPTWSQQRDENINEAWDEVMKGPKEQAIGFSVKNAVLFPSEVEKGMWPENYSLSDHARLTVVFSPVRMPCAQITF* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1246 451 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 14 439 - -
Vvi16g1246 451 SUPERFAMILY DNase I-like 34 283 IPR036691 -
Vvi16g1246 451 Gene3D Endonuclease/exonuclease/phosphatase 17 443 IPR036691 -
Vvi16g1246 451 ProSitePatterns EF-hand calcium-binding domain. 359 371 IPR018247 -
Vvi16g1246 451 Pfam Endonuclease/Exonuclease/phosphatase family 64 244 IPR005135 GO:0003824
Vvi16g1246 451 FunFam Putative calcium-binding protein 17 443 - -
Vvi16g1246 451 SUPERFAMILY EF-hand 232 380 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1246 Vvi-Chr16 21102338 21104787 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1246 9 339 EF-hand Containing Proteins AT5G54130 80.967 0.0 568
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1246 - - vvi:100260686 951.044