Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1248 ATGGATGCTCTCCCTCTGCAGGAGCTTGTTGAGTGGGAGCATAAGAGCAAGATTGATGGGAAAATGCATGGGTGCGGACACGATGCCCACACCACTATGCTGCTGGGGGCTGCCAAGTTGCTTAGTCAACGGAAGCATAAACTTAAGGGAACTGTGAGACTTCTTTTCCAGCCAGCTGAGGAGGGAGGATTGGGCGCTCGTGAAATGATCAAGGTGGGTGCTCTTGGTGATGCTGAAGTGATATTTGGAATGCATATTGATCATGAAACACCCACAGGCAGTATAGCGTCTCGTTCAGGACCTTTCCTAGCTGCAGTGTGCTCCTTTGAAGCAAGAATAGAAGGGAAAGGTGGGGATGCTGCAGAACCCCACACTAATGCAGATCCAATACTTGCAGCATCATTTTCAATTTTGGCATTGCAACAGCTCATCTCAAGAGAATTAGATCCCCTGGACAGCCAAGTGCTGTCTGTTACTACTGTCAAAGGAGGGACAACACTGAATCTAACTCCATCACATGTTGTGCTTCGAGGAAGCTTAAGGAGTCTTACCACTGAAGGTTTGAAACAACTCCGGAAGAGAGTGAAAGAGGTTATTGAAGGGCAGGCAGCTGTACACCGATGTAATGCGTACTTTGACAGAACAGAAGATTACCTTCTTCCTGCAGTTGTGAATGACGAGGTCATGCATCAGCATGTGATGAGGGTTGGGAAACTCGTGCTTGGTCCTGAGAATATCCTCATAGCTAACAAGGTGATGGCAAGTGAGGACTTTGCCTTCTATCAAGAGGTGATTCCTGGAGTCATGTTTAGCATTGGAATTAGAAATGAGCTGGTGGGTTCTGTTCACTCCCCCCACTCCCCTCACTTCTTTCTTGACGAGGATGTCCTTCCAATTGGGGCAGCACTTCACACTGCTCTTGCTGAGATATATCTGGATGAGCACCAAAATCCTACTCTACCTTAA 966 0.4752 MDALPLQELVEWEHKSKIDGKMHGCGHDAHTTMLLGAAKLLSQRKHKLKGTVRLLFQPAEEGGLGAREMIKVGALGDAEVIFGMHIDHETPTGSIASRSGPFLAAVCSFEARIEGKGGDAAEPHTNADPILAASFSILALQQLISRELDPLDSQVLSVTTVKGGTTLNLTPSHVVLRGSLRSLTTEGLKQLRKRVKEVIEGQAAVHRCNAYFDRTEDYLLPAVVNDEVMHQHVMRVGKLVLGPENILIANKVMASEDFAFYQEVIPGVMFSIGIRNELVGSVHSPHSPHFFLDEDVLPIGAALHTALAEIYLDEHQNPTLP* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1248 321 Gene3D Zn peptidases 1 297 - -
Vvi16g1248 321 NCBIfam amidohydrolase 1 300 IPR017439 GO:0016787
Vvi16g1248 321 Pfam Peptidase dimerisation domain 107 204 IPR011650 -
Vvi16g1248 321 SUPERFAMILY Zn-dependent exopeptidases 1 312 - -
Vvi16g1248 321 PANTHER PEPTIDASE M20 FAMILY MEMBER 1 318 IPR017439 GO:0016787
Vvi16g1248 321 Gene3D - 104 218 - -
Vvi16g1248 321 Pfam Peptidase family M20/M25/M40 1 308 IPR002933 GO:0016787
Vvi16g1248 321 SUPERFAMILY Bacterial exopeptidase dimerisation domain 107 212 IPR036264 -
Vvi16g1248 321 FunFam N-acetyldiaminopimelate deacetylase 104 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1248 Vvi-Chr16 21116831 21120080 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1248 K14664 - vvi:100246990 639.032