Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02973 ATGAGAACGGGTAAATGGGCAAAGAGTATGGGAAGAATATCAAGGATTGGAAGTTTTGCAATTGCTTCTTCCTTAAATGATAATAATCTACCACAACCATGCATTACTTGCACCACTTTTAATATTCTTGCTCCCATTTACAAACGTCTCAACGATGAGGACCCGGCTTGTCGAGAGAGTGATTATAGAGCATATTGGTTGGCAAGGAATCATAGGATTTTGGATTGGCTCTTAAATGAAAAGTCTTCTATTATTTGTCTTCAGGAGTTTTGGGTTGGTAATGAAGAGCTTGTTAATTTGTATGAGAAGAGACTTAAAGATGCTGGTTATGTTAGTTTTAAACTTGGAAGGACTAATAATCGCGGAGATGGTCTTTTAATAGCTGTGCAGACGGAATACTTTAATATTCTTAATTATAAGGAGTTGCACTTCAACGACTGTGGCGATCGCGTAGCTCAGTTGTTACATGTTGAATTAGTTTTTCCATTTTCAAAAGGGCCAAATAGTGAAATTAGACAGGAAATTCTTATTGTGAACACTCATCTTTTGTTTCCTCATGATGCAACACTATCTCTTGTACGATTGAAACAGGTTTATAAGATACTTCAATATGTAGAATCTTATCAGAATGATTTCCAACTCAAGCCGATGCCAATCATGTTATGCGGCGACTGGAATGGAAGCAAACGTGGACATGTTTACAAGTTCTTGAGGTCTCAAGGTTTTGTATCATCTTATGATACTGCACATCAGTACACTGATGCAGAGGCTGACAAGTGGGTTAGTCACCGAAATCATCGAGGAAATATATGCGCCGTTGATTTTATATGGCTTCTAAATCCTGACAAATATCGAAAATTACTAAAAGCAAGTTGGAGTGAAGCAGTATTTGCCATGTTCAAGTATCTATTGCGGAGAGCTTCACTGACAGAGAGTGATGCATTCGCATTTCTAAGGGCCGATAATGAAGATGATTGTATTACCTATTCTGGTTTCTGTGAAGCACTTAGACAGCTCAATTTAATTGGCCATTGCCATGGGTTGAGTGAGGAAGAGATAAAGGAGTTATGGGTCCAAGCAGACATAGATGGAAACGGTGTTCTTGACTATAAAGAATTTCTGCAGCAAATATGGATTTCGTCGGTTTTAGATCAGATAGATGACAACAAGAATAGGGAGCAAGAGGACAGTTCAAACGATGTTCAAGAACAAACAATCGGTTTTAGTGTAAAAAATGCGGTTTTGTTCCCTCCTGAAGTGGAGAAAGGTAGATGGCCGGATGATTACTCCCTTTCTGATCATGCTCGACTTACCGTTGTGTTTTCGCCGATAAGAATGCCGTGCTCTCAGATGATTTGCTGA 1362 0.3891 MRTGKWAKSMGRISRIGSFAIASSLNDNNLPQPCITCTTFNILAPIYKRLNDEDPACRESDYRAYWLARNHRILDWLLNEKSSIICLQEFWVGNEELVNLYEKRLKDAGYVSFKLGRTNNRGDGLLIAVQTEYFNILNYKELHFNDCGDRVAQLLHVELVFPFSKGPNSEIRQEILIVNTHLLFPHDATLSLVRLKQVYKILQYVESYQNDFQLKPMPIMLCGDWNGSKRGHVYKFLRSQGFVSSYDTAHQYTDAEADKWVSHRNHRGNICAVDFIWLLNPDKYRKLLKASWSEAVFAMFKYLLRRASLTESDAFAFLRADNEDDCITYSGFCEALRQLNLIGHCHGLSEEEIKELWVQADIDGNGVLDYKEFLQQIWISSVLDQIDDNKNREQEDSSNDVQEQTIGFSVKNAVLFPPEVEKGRWPDDYSLSDHARLTVVFSPIRMPCSQMIC 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02973 453 ProSitePatterns EF-hand calcium-binding domain. 361 373 IPR018247 -
Vifa2g02973 453 Gene3D - 305 377 - -
Vifa2g02973 453 SUPERFAMILY EF-hand 315 379 IPR011992 -
Vifa2g02973 453 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 31 441 - -
Vifa2g02973 453 SUPERFAMILY DNase I-like 33 248 IPR036691 -
Vifa2g02973 453 Gene3D Endonuclease/exonuclease/phosphatase 19 446 IPR036691 -
Vifa2g02973 453 ProSiteProfiles EF-hand calcium-binding domain profile. 348 383 IPR002048 GO:0005509
Vifa2g02973 453 FunFam Putative calcium-binding protein 18 445 - -
Vifa2g02973 453 Pfam Endonuclease/Exonuclease/phosphatase family 39 245 IPR005135 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02973 Vifa-Chr2 848712933 848715396 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02973 11 342 EF-hand Containing Proteins AT5G54130 76.506 0.0 540
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02973 - - gmx:100779780 826.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g02973 2 848712933 848715396 Vifa2g02973 2 848712933 848715396 ECH
Vifa1g00975 1 163855059 163857981 Vifa2g02973 2 848712933 848715396 PCT