Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g01273 ATGAGAACGGATAGGTGGGCTAAGAGCATGGGAAAGATTTCAAGGTTTGGGGGTTTCGCAGTTGCTTCTTCTAAGGAAAACCAACAACAACAACAACATCCTACTATTACCTGCACCACTTTTAACATTCTCGCTCCCATTTACAAGCGCATCAACCATGAGCAGGATCCGAGTTGCCGCGAGAGCGACTACAGAGCGTATTGGTTGGCGAGGAATCACCGGATATTGGACTGGTTGTTGAATGAGATGTCTTCAATTATCTGTCTTCAGGAATTTTGGGTTGGAAACGATGAACTTGTTAATTTATATGAGAAGAGACTTGGGGACGCTGGTTACGTGAGTTTCAAGCTTGGAAGGACAAACAACCGTGGGGACGGTCTTCTAATAGCAGTGCAAAAGGATTACTTTAATATTCTTAATTACAAGGAGTTACACTTCAATGACTTTGGGGATCGTGTGGCTCAGTTGTTACATGTTGAACTAGCTTCTTCGTTTTCACAATGGCGAAACAGTAATATTAGGCAGGAGATTTTGATTGTTAACACTCACCTGCTATTTCCCCACGATTCAACTCTATCCCTTGTACGACTGCAGCAGGTTTACAAGATTCTTCAATACGTAGAATCTTATCAGAATGATTTTCAACTCAAGCCAATGCCAATCATGCTCTGCGGTGACTGGAATGGAAGCAAACGTGGGCATGTCTACAAGTTCCTGAGGTCTCAGGGCTTTGTATCATCTTATGATACAGCACATCATTACACTGATGCAGACGCGGACAAGTGGGTTAGCCACCGCAATCATAGGGGAAATATATGTGCTGTTGATTTTATTTGGCTCCTAAATCCTGACAAATATCGAAAACTACTAAAAGCAAGTTGGAGTGAAGCAGTGTTCGGTATGTTCAAGTATCTGGTACGGAGAGCTTCATTGACTGAGAGTGATGCATTTGCCTTTCTAAAGGCTGATAATGAAGATTGTATTACCTATTCAGGTTTCTGTGAAGCACTTAAACAGCTCAGTTTAACTGGTCATTGTCATGGATTAAATGACGAAGAGATCAAGGACTTGTGGCTCCAAGCAGACGTAAATGGAAATGGTGTTCTTGATTATAAAGAATTCCTGCAGCAGATCTGGAATTCAACAGCTCCAGAAGAGAGCGATGATAACAAAATTGGGGAGGAGCAGGATGACGTTGTAGATGATTCACAGGATCAAACAATTGGTTTCTGTGTAAAAAATGCAGTTCTGTTTCCTCCAGAGAATGCCATGCTCCCAGTTGATTTGCTAACAATATGCTCCATTGTGGCCATTCTTGCTAATGGTTTTGGAATTACAGACATGACATATAAAGGAATGGGCGAAGCAGTGGAACGAGTAAGGAAAGATTCAAAAGTTCTTTTCTGGGGAGATTTTATAGAGCCCTGTGTTGTGACGCTGCACCATCATTAG 1452 0.4201 MRTDRWAKSMGKISRFGGFAVASSKENQQQQQHPTITCTTFNILAPIYKRINHEQDPSCRESDYRAYWLARNHRILDWLLNEMSSIICLQEFWVGNDELVNLYEKRLGDAGYVSFKLGRTNNRGDGLLIAVQKDYFNILNYKELHFNDFGDRVAQLLHVELASSFSQWRNSNIRQEILIVNTHLLFPHDSTLSLVRLQQVYKILQYVESYQNDFQLKPMPIMLCGDWNGSKRGHVYKFLRSQGFVSSYDTAHHYTDADADKWVSHRNHRGNICAVDFIWLLNPDKYRKLLKASWSEAVFGMFKYLVRRASLTESDAFAFLKADNEDCITYSGFCEALKQLSLTGHCHGLNDEEIKDLWLQADVNGNGVLDYKEFLQQIWNSTAPEESDDNKIGEEQDDVVDDSQDQTIGFCVKNAVLFPPENAMLPVDLLTICSIVAILANGFGITDMTYKGMGEAVERVRKDSKVLFWGDFIEPCVVTLHHH 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g01273 483 ProSitePatterns EF-hand calcium-binding domain. 362 374 IPR018247 -
Vian4g01273 483 FunFam Putative calcium-binding protein 18 430 - -
Vian4g01273 483 Gene3D Endonuclease/exonuclease/phosphatase 19 314 IPR036691 -
Vian4g01273 483 Gene3D - 315 378 - -
Vian4g01273 483 SUPERFAMILY EF-hand 265 381 IPR011992 -
Vian4g01273 483 Pfam Endonuclease/Exonuclease/phosphatase family 40 247 IPR005135 GO:0003824
Vian4g01273 483 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 24 282 - -
Vian4g01273 483 SUPERFAMILY DNase I-like 31 250 IPR036691 -
Vian4g01273 483 ProSiteProfiles EF-hand calcium-binding domain profile. 349 384 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g01273 Vian-Chr4 25689674 25693241 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g01273 11 342 EF-hand Containing Proteins AT5G54130 76.276 0.0 530
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g01273 - - gmx:100779780 766.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g01273 4 25689674 25693241 Vian4g01273 4 25689674 25693241 ECH
Vian7g01990 7 32331382 32334730 Vian4g01273 4 25689674 25693241 PCT