Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1654 ATGAGAACGGGTAAATGGGCAAAGAGTATGGGAAGAATATCAAGGATTGGAAGTTTTGCCATTGCTTCTTCCTTAAATGATAATAATCTACCACAACCTTGCATTACTTGCACCACTTTTAATATTCTTGCTCCCATTTACAAACGTCTCAAAGATGAGGACCCGACTTGTCGAGAGAGTGATTATAGAGCATATTGGTTGGCGAGGAATCATAGAATTTTGGATTGGCTCTTAAATGAAAAGTCTTCTATTATTTGTCTTCAGGAGTTTTGGGTTGGAAATGAAGAGCTTGTTAATTTGTATGAGAAAAGACTTAAAGATGCTGGTTATGTTAGTTTCAAACTCGGAAGGACTAATAACCGAGGAGATGGTCTTCTAATAGCAGTGCAAACGGAATACTTTAATATTCTTAATTATAAAGAGTTGCACTTCAACGACTGTGGCGATCGCGTAGCTCAGTTGTTACATGTTGAGTTAGTCTTTCCGTTTTCAAAATGGCAAAATAGTGAAATTAGGCAGGAAATTCTTATCGTTAACACTCACCTTCTGTTTCCTCATGATGCAACACTGTCGCTTGTACGGCTGAAACAGGTTTATAAGATACTTCAATATGTAGAATCTTATCAGAATGATTTTCAACTCAAGCCAATGCCAATCATGTTATGCGGCGATTGGAATGGAAGCAAACGTGGACATGTTTACAAGTTCTTGAGGTCTCAAGGTTTTGTATCATCTTATGATACTGCACATCAGTACACTGATGCAGAGGCGGATAAGTGGGTTAGTCACCGAAATCATCGAGGAAATATATGTGCTGTTGATTTTATCTGGCTTCTAAATCCTGACAAATATCGAAAATTGCTAAATGCAAGTTGGACTGAAGCAGTGTTTGCCATGTTCAAGTATCTATTGCGGAGAGCTTCACTGACAGAGAGTGATGGATTCGCATTTCTAAGGGCCGATAAGGAAGATTGTATTACCTATTCTGGTTTCTGTGAAGCACTTCGTCAGCTCAATTTAATTGGCCATTGTCATGGGTTGAGTGAGGAAGAGATAAAGGAGTTGTGGGTCCAAGCTGACATAGACGGAAACGGTGTTCTTGACTATAAAGAATTTCTGCAGCAAATATGGATTTCGTCGGTTTTAGATCAGATAGACGACAACAAGAATAGGGAGCAAGAGGACAGTTCAAATGATGTTCAAGAACAAACAATTGGTTTTAGTGTAAAAAATGCGGTTTTATTCCCTCCTGAGGTGGAGAAAGGGAGATGGCCTGAAGACTACTCCCTTTCTGATCATGCTCGACTTACCGTTGTGTTTTCGCCGATAACAATGCCATGCTCTCAGATGATTTGCTGA 1359 0.3944 MRTGKWAKSMGRISRIGSFAIASSLNDNNLPQPCITCTTFNILAPIYKRLKDEDPTCRESDYRAYWLARNHRILDWLLNEKSSIICLQEFWVGNEELVNLYEKRLKDAGYVSFKLGRTNNRGDGLLIAVQTEYFNILNYKELHFNDCGDRVAQLLHVELVFPFSKWQNSEIRQEILIVNTHLLFPHDATLSLVRLKQVYKILQYVESYQNDFQLKPMPIMLCGDWNGSKRGHVYKFLRSQGFVSSYDTAHQYTDAEADKWVSHRNHRGNICAVDFIWLLNPDKYRKLLNASWTEAVFAMFKYLLRRASLTESDGFAFLRADKEDCITYSGFCEALRQLNLIGHCHGLSEEEIKELWVQADIDGNGVLDYKEFLQQIWISSVLDQIDDNKNREQEDSSNDVQEQTIGFSVKNAVLFPPEVEKGRWPEDYSLSDHARLTVVFSPITMPCSQMIC* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1654 452 ProSiteProfiles EF-hand calcium-binding domain profile. 347 382 IPR002048 GO:0005509
Psa5g1654 452 Pfam Endonuclease/Exonuclease/phosphatase family 39 246 IPR005135 GO:0003824
Psa5g1654 452 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 1 448 - -
Psa5g1654 452 SUPERFAMILY DNase I-like 33 249 IPR036691 -
Psa5g1654 452 PANTHER ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN 1 448 - -
Psa5g1654 452 Gene3D Endonuclease/exonuclease/phosphatase 20 445 IPR036691 -
Psa5g1654 452 ProSitePatterns EF-hand calcium-binding domain. 360 372 IPR018247 -
Psa5g1654 452 SUPERFAMILY EF-hand 261 377 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1654 Psa-Chr5 129641734 129644699 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1654 11 341 EF-hand Containing Proteins AT5G54130 75.301 0.0 531
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1654 - - gmx:100779780 826.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1654 5 129641734 129644699 Psa5g1654 5 129641734 129644699 ECH