Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02206 ATGATTCAACTCTGTCCCTTGTACGACTGCACCAGGTATCTAAACATTTTAATTGTGATATCCAAACACTTACCAATTATTAGACTTACCCCAAAATTTTCTTTTATGCAGGTCTACAAGATTCTTCAATATGTAGAATCTTATCAGAATGATTTCCAACTCAAGCCAATGCCAATCATGCTATGCGGTGACTGGAATGGAAGCAAACGTGGACATGTTTACAAGTTCCTGAGGTCTCAAGGTTTTGTATCATCTTATGATACTGCACATCATTATACTGATGCAGATGCTGACAAGTGGGTTAGCCACCGCAATCACCGGGGGAATATATGTGCTGTTGATTTTATTTGGCTTCTAAATCCTGACAAATATCGAAAACTACTAAAAGCAAGTTGGAGTGAAGCAGTGTTTGGCATGTTCAAGTATCTATTGCGGAGAGCTTCACTGACAGAGAGTGATGCATTTGCCTTTTTAAAGGGTGATAATGAAGATTGTATCACCTATTCTTGTTTCTGTGAAGCACTTAGACAGCTCAGTTTAACTGGTCATTGCCATGGGTTAAGTGATGAAGAGGTGAAGGACTTGTGGGTCATAGCAGATGTAGATGGAAACGGTGTTCTTGATTATAAGGAATTTCTGCATCAAATCTGGAATTCAACAGTGACTGATCAGAAAGATGACAGCAAGAATGGGGAGCAGGAGGACTGTTCAAATGATGCTCAGGAACAAACAATTGGTTTTAGTGTAAAAAATGCAGTTCTGTTCCCTCCAGAAGTGGAGAAAGGTAGATGGCCTGAAGACTACTCCCTCTCTGATCATGCCAGACTCACTGTAGTGTTCTCTCCAATAAGAATGCCATGCTCCCAGATGATTTGCTAA 879 0.4027 MIQLCPLYDCTRYLNILIVISKHLPIIRLTPKFSFMQVYKILQYVESYQNDFQLKPMPIMLCGDWNGSKRGHVYKFLRSQGFVSSYDTAHHYTDADADKWVSHRNHRGNICAVDFIWLLNPDKYRKLLKASWSEAVFGMFKYLLRRASLTESDAFAFLKGDNEDCITYSCFCEALRQLSLTGHCHGLSDEEVKDLWVIADVDGNGVLDYKEFLHQIWNSTVTDQKDDSKNGEQEDCSNDAQEQTIGFSVKNAVLFPPEVEKGRWPEDYSLSDHARLTVVFSPIRMPCSQMIC. 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02206 292 ProSiteProfiles EF-hand calcium-binding domain profile. 187 222 IPR002048 GO:0005509
Seca4g02206 292 ProSitePatterns EF-hand calcium-binding domain. 200 212 IPR018247 -
Seca4g02206 292 SUPERFAMILY EF-hand 103 219 IPR011992 -
Seca4g02206 292 SUPERFAMILY DNase I-like 15 121 IPR036691 -
Seca4g02206 292 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 17 280 - -
Seca4g02206 292 Gene3D Endonuclease/exonuclease/phosphatase 14 141 IPR036691 -
Seca4g02206 292 Gene3D - 142 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02206 Seca-Chr4 37327181 37331569 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02206 24 288 EF-hand Containing Proteins AT1G02270 59.774 1.51e-112 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02206 - - pvu:PHAVU_009G039100g 493.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02206 4 37327181 37331569 Seca4g02206 4 37327181 37331569 ECH
Seca4g02206 4 37327181 37331569 Seca4g02206 4 37327181 37331569 PCT