Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0549 ATGAGAACGGATAGGTGGGCTAAGAGTATGGGAAGAATTTCAAGGATTGGGAGTTTTGCAATTTCTTCATCCATTAAGGAGAATCAGCAACAATCTTGTATCACATGCACTACTTTTAACATTCTTGCTCCTATTTACAAACGCATCGATGATGAGGACCCTACTTGCCGTGAAAGTGATTATAGAGCGTATTGGTTGGCAAGGAATCACAGGATATTGGATTGGCTTTTGCATGAGAGATCTTCTATTATCTGTCTTCAGAATGGGATAGAGACTAATATGTATGTTGGGTTTGTGAAGGAGTTTTGGGTTGGAAATGAAGAGCTTGTTAATTTGTATGAGAAGAGATTTGGAGATGCTGGTTATGTTAGTTTCAAGCTTGAAAGGACTAACAACCGTGGCGACGGTCTTCTGATAGCAGTGCAAAAGGAATACTTTAATATTCTAAATTACAAGGAGTTGCACTTCAATGATTGTGGTGATCGCGTAGCTCAGTTGTTACATGTTGAACTAGCTTTTCCTTGTTCACAGTGGCGAAACAATAATGTCAGGCAGGAAATTCTGATTGTTAACACTCACCTATTATTTCCTCATGATTCAACCCTAAGGCTTGTTCGACTGCATCAGGTCTACAAGATACTTCAATATGTAGAATCTTATCAAAAAGATTTCCATCTTAAGCCCATGCCGATCATGCTATGCGGAGACTGGAACGGAAGCAAACGTGGACATGTTTACAAGTTCTTGAGGTCTCAAGGGTTTGAATCATCTTATGATACTGCACATCACTACACTGATGCAGATGCTGATAAGTGGGTTAGTCATCGCAATCATCGGGGAAATATATGTGCGGTTGATTTTATTTGGCTTCTAAATCCGGACAAATATCGAAAACTACTAAAAGCTAGTTGGACCGAAGCAGTATTTAGCATGTTCAAGTCTCTGCTCCGTAGAGCTTCGCTAACAGAGAGTGATGCGTTTGCCTTTCTAAAGGCCGATAATGAAGATTGCATTACCTATTCTGGTTTCTGTGAAGCACTTCGACATCTTAATTTATTTGGTCATTGCTATGGGCTAAGTGTTGAAGAGACAAAGGATTTGTGGGTCCAAGCAGATATAGATGGAAATGGTGTTCTCGATTATAAAGAATTTCAGCAGCAAATCTGGAATTCAACAAGTTTAGATCAAAGAGATGACAACAAGAGTGAGGAGCATGATAATGGTTCAAACGCTCGGGAACAAACAATTGGTTTTAGTGTAAAAAATGCAGTTCTGTTTCCCCCTGAGGTTGAGAAAGGTCGATGGCCTGAAGACTACTCTCTTTCTGATCATGCAAGACTCACCGTTGTTTTCTCGCCGATAAGGATGCCATGCTCCCAAATGATTTGCTGA 1392 0.4016 MRTDRWAKSMGRISRIGSFAISSSIKENQQQSCITCTTFNILAPIYKRIDDEDPTCRESDYRAYWLARNHRILDWLLHERSSIICLQNGIETNMYVGFVKEFWVGNEELVNLYEKRFGDAGYVSFKLERTNNRGDGLLIAVQKEYFNILNYKELHFNDCGDRVAQLLHVELAFPCSQWRNNNVRQEILIVNTHLLFPHDSTLRLVRLHQVYKILQYVESYQKDFHLKPMPIMLCGDWNGSKRGHVYKFLRSQGFESSYDTAHHYTDADADKWVSHRNHRGNICAVDFIWLLNPDKYRKLLKASWTEAVFSMFKSLLRRASLTESDAFAFLKADNEDCITYSGFCEALRHLNLFGHCYGLSVEETKDLWVQADIDGNGVLDYKEFQQQIWNSTSLDQRDDNKSEEHDNGSNAREQTIGFSVKNAVLFPPEVEKGRWPEDYSLSDHARLTVVFSPIRMPCSQMIC 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0549 463 Pfam Endonuclease/Exonuclease/phosphatase family 38 257 IPR005135 GO:0003824
Lal4g0549 463 SUPERFAMILY EF-hand 275 391 IPR011992 -
Lal4g0549 463 Gene3D Endonuclease/exonuclease/phosphatase 18 456 IPR036691 -
Lal4g0549 463 MobiDBLite consensus disorder prediction 393 412 - -
Lal4g0549 463 ProSiteProfiles EF-hand calcium-binding domain profile. 359 394 IPR002048 GO:0005509
Lal4g0549 463 SUPERFAMILY DNase I-like 22 261 IPR036691 -
Lal4g0549 463 ProSitePatterns EF-hand calcium-binding domain. 372 384 IPR018247 -
Lal4g0549 463 PANTHER ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN 1 459 - -
Lal4g0549 463 MobiDBLite consensus disorder prediction 396 410 - -
Lal4g0549 463 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 1 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0549 Lal-Chr4 3981687 3990035 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0549 11 353 EF-hand Containing Proteins AT5G54130 73.837 0.0 525
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0549 - - gmx:100779780 811.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0633 17 4488519 4493153 Lal4g0549 4 3981687 3990035 ECH
Lal4g0549 4 3981687 3990035 Lal4g0549 4 3981687 3990035 ECH
Lal22g0384 22 2442948 2446304 Lal4g0549 4 3981687 3990035 PCT
Lal4g0549 4 3981687 3990035 Lal22g0384 22 2442948 2446304 PCT