Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02017 ATGAGAACGGATAGGTGGGCTAAGAGCATGGGAAGGATTTCAAGGTTTGGGGGTTTCTCAGTTGCTTCTTCTAAGGAAAACCAACAACAACAACAACAACAACCTACTATTACCTGCACCACTTTTAACATTCTCGCTCCCATTTACAAGCGCATCAACCATGAGGATCCGAGTTGCCGCGAGAGCGACTACAGAGCGTATTGGTTGGCGAGGAACCACAGGATATTGGACTGGTTGTTGAATGAGATGTCTTCAATTATCTGTCTTCAGGAATTTTGGGTTGGGAATGATGAACTTGTTAATTTGTATGAGAAGAGACTTGGGGACGCTGGTTACGTTAGTTTCAAGCTTGGAAGGACAAACAACCGTGGGGACGGTCTTCTAATAGCAGTGCTAAAGGAATACTTTAATATTTTTAATTACAAGGAGTTACACTTCAATGACTTTGGAGATCGTGTGGCTCAGTTGTTACATGTTGAACTAGGTTCTGCGTTTTCACAATGGCGAAGCAGTAATATTAGGCAGGAGATTTTGATTGTTAACACTCACCTGCTATTTCCCCACGATTCAACTCTATCCCTTGTACGACTGCAGCAGGTTTACAAGATTCTTCAATACGTAGAATCATATCAGAATGATTTTCAACTCAAGCCAATGCCAATCATGCTCTGCGGTGACTGGAATGGAAGCAAACGTGGACATGTCTACAAGTTCCTGAGGTCTCAGGGATTTGTATCATCTTACGATACAGCACATGATTACACTGATGCAGATGCGGACAAGTGGGTTAGCCACCGCAATCATAGGGGAAATATATGTGCTGTTGATTTTATTTGGCTCCTAAATCCTGACAAATATCGAAAACTACTAAAAGCAAGTTGGAGTGAAGCAGTGTTCGGTATGTTCAAGTATTTGGTACGGAGAGCTTCATTGACTGAGAGTGATGCATTTGCCTTTCTAAAGGCTGATAATGAAGATTGTATCACCTATTCAGGTTTCTGTGAAGCACTTAAACATCTCAGTTTAACTGGTCATTGTCATGGATTAAATGACGAAGAGATCAAGGACTTGTGGCTCCAAGCAGACGTAAATGGAAATGGTGTTCTTGATTATAAAGAATTCCTGCAGCAGATCTGGAATTCAACAGCTCCAGAACAGAGTGATGAGAACAAAATTGGGGAGCAGGATGAGGTTGTAAATGATTCACAGGAACAAACAATTGGTTTCTGTGTAAAAAATGCAGTTCTGTTTCCTCCAGAGGTGGAGAAAGGTAGATGGCCTGAAGATTACTCTCTTTCTGATCATGCACGACTCACTGTAGTGTTCTCGCCAATAAGAATGCCATGCTCCCAGTTGATTTGCTAA 1365 0.4183 MRTDRWAKSMGRISRFGGFSVASSKENQQQQQQQPTITCTTFNILAPIYKRINHEDPSCRESDYRAYWLARNHRILDWLLNEMSSIICLQEFWVGNDELVNLYEKRLGDAGYVSFKLGRTNNRGDGLLIAVLKEYFNIFNYKELHFNDFGDRVAQLLHVELGSAFSQWRSSNIRQEILIVNTHLLFPHDSTLSLVRLQQVYKILQYVESYQNDFQLKPMPIMLCGDWNGSKRGHVYKFLRSQGFVSSYDTAHDYTDADADKWVSHRNHRGNICAVDFIWLLNPDKYRKLLKASWSEAVFGMFKYLVRRASLTESDAFAFLKADNEDCITYSGFCEALKHLSLTGHCHGLNDEEIKDLWLQADVNGNGVLDYKEFLQQIWNSTAPEQSDENKIGEQDEVVNDSQEQTIGFCVKNAVLFPPEVEKGRWPEDYSLSDHARLTVVFSPIRMPCSQLIC 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02017 454 Gene3D Endonuclease/exonuclease/phosphatase 20 447 IPR036691 -
Viun9g02017 454 Pfam Endonuclease/Exonuclease/phosphatase family 41 247 IPR005135 GO:0003824
Viun9g02017 454 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 23 442 - -
Viun9g02017 454 SUPERFAMILY DNase I-like 25 250 IPR036691 -
Viun9g02017 454 FunFam Putative calcium-binding protein 18 446 - -
Viun9g02017 454 ProSitePatterns EF-hand calcium-binding domain. 362 374 IPR018247 -
Viun9g02017 454 SUPERFAMILY EF-hand 265 381 IPR011992 -
Viun9g02017 454 ProSiteProfiles EF-hand calcium-binding domain profile. 349 384 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02017 Viun-Chr9 30008130 30012284 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g02017 11 342 EF-hand Containing Proteins AT5G54130 75.676 0.0 526
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02017 - - gmx:100779780 841.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g02017 9 30008130 30012284 Viun9g02017 9 30008130 30012284 ECH
Viun8g01730 8 28263916 28267783 Viun9g02017 9 30008130 30012284 PCT