Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0633 ATGAGAACGGATCGGTGGGCTAAGAGTATGGGAAGAATTTCAAGGATTGGGAGTGTTGCAATTGCTTCTTCCATTAAGGAGAATCAGCAACAACCTTGCATTACCTGCACTACTTTTAACATTCTCGCTCCTATTTACAAGCGCATCGATCATGAGGACCCAAGTTGCCGTGAAAGTGATTATAGAGCGTTCTGGTTGGCAAGGAATCATACTATATTGGATTGGCTTTTGCAGGAGAGCTCTTCAATCATCTGTCTTCAGGAATTTTGGGTTGGAAATGAAGAGCTTGTTAATTTGTATGAGAAGAGACTTGGGGATGCTGGTTATGTCAGTTTCAAGCTTGGAAGGACTAACAACCGTGGCGATGTTTTGTTTCAGAACTGCTTGTTGAAGATTTTAATATGCACAAAAAATTCTGATATGGCGTTCCCGTGGGATATACAGGAGTTGCACTTCAATGATTGTGGTGATCGTGTAGCTCAGCTATTACATGTTGAACTAGCTTTTCCGTGTTCACAGGGGCAGAACAGTGATATCAGGCAGGAAATTCTGATTGTTAACACTCACCTATTATTTCCTCATGATTCAAGCTTAAGCCTGGTTCGGCTGCATCAGGTCTACAAGATACTTCAATATGTAGAATCTTATCAAGAAGATTTCCAACTTAAGCCCATGCCAATCATGCTATGCGGTGACTGGAACGGAAGCAAACGTGGATATGTTTACAAGTTCTTGAGGTCTCAGGGGTTTGAATCATCCTATGATACTGCACATCACTACACTGATGCAGATGCTCATAAGTGGGTTAGCCATCGTAATCACCGTGGAAATATCTGTGCTGTTGATTTCATTTGGCTTTTAAATCCTGACAAATATCGAAAACTACTAAAAGCTAGTTGGAGTGAAGCAGTATTTAGCATGTTCAAGTCTCTACTGAGAAGAGCTTCACTAACAGAGAGTGATGCATTTGCCTTTCTAAAGGCTGATAATGAAGATTGTATTACCTATTCTGGTTTCTGTGAAGCACTTCGACAGCTTAATTTATTTGGTCATTGCTATGGGCTAAGTATTGAAGAGACGAAGGATTTGTGGGTCCAATCAGATATAGATGGAAATGGTGTTCTTGATTATAAAGAATTTCAGCAAATCTGGAATTCAACAAGTTTAGAACTAAGAGACGACAAGAATGAGGAGCAGGATAATGGTTCAAATGATGCTCAGGAGCAAACAATTGGTTTTAGTGTAAAAAATGCAGTTCTGTTCCCTCCAGAGGTGGAGAAAGGTAGTTGGCCAGAAGACTACTCTCTTTCCGATCATGCAAGACTCACGGTGGTTTTCTCGCCGATAAGAGTTTCACGCTCCCAAATGATTTGCTGA 1377 0.4081 MRTDRWAKSMGRISRIGSVAIASSIKENQQQPCITCTTFNILAPIYKRIDHEDPSCRESDYRAFWLARNHTILDWLLQESSSIICLQEFWVGNEELVNLYEKRLGDAGYVSFKLGRTNNRGDVLFQNCLLKILICTKNSDMAFPWDIQELHFNDCGDRVAQLLHVELAFPCSQGQNSDIRQEILIVNTHLLFPHDSSLSLVRLHQVYKILQYVESYQEDFQLKPMPIMLCGDWNGSKRGYVYKFLRSQGFESSYDTAHHYTDADAHKWVSHRNHRGNICAVDFIWLLNPDKYRKLLKASWSEAVFSMFKSLLRRASLTESDAFAFLKADNEDCITYSGFCEALRQLNLFGHCYGLSIEETKDLWVQSDIDGNGVLDYKEFQQIWNSTSLELRDDKNEEQDNGSNDAQEQTIGFSVKNAVLFPPEVEKGSWPEDYSLSDHARLTVVFSPIRVSRSQMIC 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0633 458 SUPERFAMILY DNase I-like 34 278 IPR036691 -
Lal17g0633 458 Gene3D Endonuclease/exonuclease/phosphatase 24 307 IPR036691 -
Lal17g0633 458 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 1 454 - -
Lal17g0633 458 SUPERFAMILY EF-hand 244 389 IPR011992 -
Lal17g0633 458 Pfam Endonuclease/Exonuclease/phosphatase family 38 253 IPR005135 GO:0003824
Lal17g0633 458 ProSitePatterns EF-hand calcium-binding domain. 368 380 IPR018247 -
Lal17g0633 458 PANTHER ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN 1 454 - -
Lal17g0633 458 ProSiteProfiles EF-hand calcium-binding domain profile. 355 390 IPR002048 GO:0005509
Lal17g0633 458 Gene3D - 320 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0633 Lal-Chr17 4488519 4493153 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0633 11 349 EF-hand Containing Proteins AT5G54130 73.529 0.0 513
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0633 - - gmx:100797792 780.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0633 17 4488519 4493153 Lal4g0549 4 3981687 3990035 ECH
Lal17g0633 17 4488519 4493153 Lal17g0633 17 4488519 4493153 ECH