Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
Valid last name is required.
    
Valid last name is required.
    
Valid line number is required.
Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi2g0332 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0333 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0334 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0335 . . Accr5g00527 . Adu03g04233 . . . . . . . . . Alju03g0722 . . . . . Arst3g05600 . Bach11g00660 . Bisa07g0491 . . . . . . . Dere02g2436 . . . . . Glsi11g2751 . . . Gma05g01598 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mepo2g03563 . . . . . . . Phac2g03107 . . . Prci3g0487 . . . Pste3g03198 . Pte2g00651 Pte19g00729 . . . . Pvu2g2102 . . . . . . . . . . . . . . . . . Vian1g02941 . Vifa1g10838 . Vimu11g01357 . . . . . . .
Vvi2g0336 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0337 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mal5g3780 . . . . . . . Mtr4g3506 . . . . . . . . . . . . . . . . . . . . . . . . . . Sto6g3034 . . Tpr4g3882 . . . Tsu04g02268 . . . . . . . . . . . .
Vvi2g0338 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0339 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0340 . . . . Adu03g02749 Adu02g00186 Aed11g1731 . Aev05g0989 . Ahy15g1050 . Aip05g01087 . . . . . Apr7g0578 Apr2g1225 Arst3g03648 Arst2g00237 Bach4g00109 . . . Bva08g00129 Bva11g02151 Car08g00212 Car06g00501 Cca06g01810 . . . Dod02g1115 . . . . . . . Gma05g02060 Gma08g00163 . . . . . . . . Lal16g1198 Lal23g1535 . . . . . . Lapu3g03610 Lapu10g00147 Lasa7g04771 Lasa4g00889 . . . . . . . . Lja4g0396 . Mal6g0217 Mal7g4963 Mepo2g04659 Mepo1g03791 Mesa13g00466 Mesa29g04413 . . Mtr5g0282 Mtr8g3494 Phac2g00413 Phac10g01284 Phco4g03319 Phco1g00739 . . Psa2g4193 Psa7g0705 Pste3g00990 Pste6g02020 Pte14g01296 Pte12g00053 . . Pumo6g00472 Pumo7g00794 Pvu2g3007 Pvu10g1065 Rops2g00521 Rops4g01525 Seca12g06521 Seca2g00943 . Spst4g01855 Ssu2g2883 . . . Tpr2g3883 Tpr3g0619 Trre7g05481 Trre15g01134 Tsu05g00261 Tsu02g00431 Vian1g03854 Vian9g00638 Vifa6g03587 Vifa4g00921 Vimu11g04442 Vimu9g00260 Viun3g00542 Viun10g01951 Vivi5g05953 Vivi7g04386 Vra11g0267 .
Vvi2g0341 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Previous Page 197 of 2817 Next

DecoBrowse

Select Species Gene Chromosome Start End Strand
Sto Sto6g3034 Chr6 37373208 37380359 +
Aed Aed11g1731 Chr11 20895106 20898760 -
Apr Apr7g0578 Chr7 12273948 12278275 +
Apr Apr2g1225 Chr2 18466158 18469860 -
Bva Bva08g00129 Chr08 646791 650430 +
Bva Bva11g02151 Chr11 17674031 17676067 -
Car Car08g00212 Chr08 1671846 1676028 +
Car Car06g00501 Chr06 5049046 5054554 +
Cca Cca06g01810 Chr06 33520448 33523769 -
Gma Gma05g02060 Chr05 41856208 41860256 -
Gma Gma08g00163 Chr08 1403303 1406553 -
Lal Lal16g1198 Chr16 8252911 8257363 +
Lal Lal23g1535 Chr23 15493807 15497349 -
Lja Lja4g0396 Chr4 3171554 3175371 +
Lja Lja4g0396 Chr4 3171554 3175371 +
Mal Mal6g0217 Chr6 3062201 3067006 -
Mal Mal7g4963 Chr7 118510515 118514050 -
Mtr Mtr5g0282 Chr5 2632086 2636601 +
Mtr Mtr8g3494 Chr8 45446010 45450885 -
Psa Psa7g0705 Chr7 48780579 48785216 -
Pte Pte14g01296 Chr14 34119574 34123118 -
Seca Seca12g06521 Chr12 157223556 157226951 -
Ssu Ssu2g2883 Chr2 90049876 90053872 -
Tpr Tpr2g3883 Chr2 41588462 41593223 -
Tpr Tpr3g0619 Chr3 6067605 6071912 +
Tsu Tsu05g00261 Chr05 1933674 1938497 +
Tsu Tsu02g00431 Chr02 3612776 3617628 +
Vra Vra11g0267 Chr11 1849647 1854555 +
Vvi Vvi2g0332 Chr2 2663367 2676459 -
Vvi Vvi2g0333 Chr2 2680726 2685728 -
Vvi Vvi2g0334 Chr2 2711964 2712908 +
Vvi Vvi2g0335 Chr2 2716448 2718224 +
Accr Accr5g00527 Chr5 26529410 26535610 +
Adu Adu03g04233 Chr03 131347590 131349218 +
Alju Alju03g0722 Chr03 31330051 31333445 +
Arst Arst3g05600 Chr3 130111464 130113445 +
Bach Bach11g00660 Chr11 5023276 5032126 -
Bisa Bisa07g0491 Chr07 12322929 12327013 -
Dere Dere02g2436 Chr02 26279775 26283482 +
Glsi Glsi11g2751 Chr11 20669275 20688018 +
Gma Gma05g01598 Chr05 37763651 37766144 -
Mepo Mepo2g03563 Chr2 45066214 45070150 +
Phac Phac2g03107 Chr2 32738238 32740388 -
Prci Prci3g0487 Chr3 6326109 6330843 +
Pste Pste3g03198 Chr3 24663028 24665516 -
Pte Pte2g00651 Chr2 5043450 5045439 -
Pte Pte19g00729 Chr19 5825320 5830253 -
Pvu Pvu2g2102 Chr2 36429157 36431813 -
Vian Vian1g02941 Chr1 48120093 48126477 -
Vifa Vifa1g10838 Chr1 1823487681 1823489994 +
Vimu Vimu11g01357 Chr11 15184283 15191918 +
Vvi Vvi2g0336 Chr2 2720211 2720687 -
Vvi Vvi2g0337 Chr2 2722724 2725004 +
Mal Mal5g3780 Chr5 106265044 106268236 -
Mtr Mtr4g3506 Chr4 48754338 48759429 -
Sto Sto6g3034 Chr6 37373208 37380359 +
Tpr Tpr4g3882 Chr4 44988887 44993705 +
Tsu Tsu04g02268 Chr04 25295627 25300323 -
Vvi Vvi2g0338 Chr2 2727783 2744085 +
Vvi Vvi2g0339 Chr2 2747310 2750881 -
Vvi Vvi2g0340 Chr2 2766798 2768642 -
Adu Adu03g02749 Chr03 102379888 102385186 +
Adu Adu02g00186 Chr02 2184395 2190552 +
Aed Aed11g1731 Chr11 20895106 20898760 -
Aev Aev05g0989 Chr05 6967040 6969923 -
Ahy Ahy15g1050 Chr15 16190747 16193056 -
Aip Aip05g01087 Chr05 15651083 15652847 -
Apr Apr7g0578 Chr7 12273948 12278275 +
Apr Apr2g1225 Chr2 18466158 18469860 -
Arst Arst3g03648 Chr3 101126796 101132799 +
Arst Arst2g00237 Chr2 2165140 2171281 +
Bach Bach4g00109 Chr4 741293 744823 +
Bva Bva08g00129 Chr08 646791 650430 +
Bva Bva11g02151 Chr11 17674031 17676067 -
Car Car08g00212 Chr08 1671846 1676028 +
Car Car06g00501 Chr06 5049046 5054554 +
Cca Cca06g01810 Chr06 33520448 33523769 -
Dod Dod02g1115 Chr02 13856924 13861521 -
Gma Gma05g02060 Chr05 41856208 41860256 -
Gma Gma08g00163 Chr08 1403303 1406553 -
Lal Lal16g1198 Chr16 8252911 8257363 +
Lal Lal23g1535 Chr23 15493807 15497349 -
Lapu Lapu3g03610 Chr3 59536797 59540613 -
Lapu Lapu10g00147 Chr10 3257563 3261535 -
Lasa Lasa7g04771 Chr7 686415309 686418745 -
Lasa Lasa4g00889 Chr4 43096877 43100184 +
Lja Lja4g0396 Chr4 3171554 3175371 +
Mal Mal6g0217 Chr6 3062201 3067006 -
Mal Mal7g4963 Chr7 118510515 118514050 -
Mepo Mepo2g04659 Chr2 54929724 54934756 -
Mepo Mepo1g03791 Chr1 44144076 44148771 -
Mesa Mesa13g00466 Chr13 5463474 5467773 +
Mesa Mesa29g04413 Chr29 72760915 72765496 -
Mtr Mtr5g0282 Chr5 2632086 2636601 +
Mtr Mtr8g3494 Chr8 45446010 45450885 -
Phac Phac2g00413 Chr2 2048014 2053112 +
Phac Phac10g01284 Chr10 35375260 35378579 -
Phco Phco4g03319 Chr4 53716166 53719399 -
Phco Phco1g00739 Chr1 6759141 6761875 +
Psa Psa2g4193 Chr2 422204434 422208438 -
Psa Psa7g0705 Chr7 48780579 48785216 -
Pste Pste3g00990 Chr3 6265798 6269061 +
Pste Pste6g02020 Chr6 9443990 9447955 +
Pte Pte14g01296 Chr14 34119574 34123118 -
Pte Pte12g00053 Chr12 516130 519749 +
Pumo Pumo6g00472 Chr6 5907190 5911652 +
Pumo Pumo7g00794 Chr7 14016055 14021122 +
Pvu Pvu2g3007 Chr2 45542822 45546839 -
Pvu Pvu10g1065 Chr10 35929255 35932467 -
Rops Rops2g00521 Chr2 7577252 7581193 +
Rops Rops4g01525 Chr4 38188248 38192459 -
Seca Seca12g06521 Chr12 157223556 157226951 -
Seca Seca2g00943 Chr2 15194464 15200773 +
Spst Spst4g01855 Chr4 58882611 58885523 -
Ssu Ssu2g2883 Chr2 90049876 90053872 -
Tpr Tpr2g3883 Chr2 41588462 41593223 -
Tpr Tpr3g0619 Chr3 6067605 6071912 +
Trre Trre7g05481 Chr7 60583191 60586933 -
Trre Trre15g01134 Chr15 8784090 8788188 +
Tsu Tsu05g00261 Chr05 1933674 1938497 +
Tsu Tsu02g00431 Chr02 3612776 3617628 +
Vian Vian1g03854 Chr1 61609047 61612278 -
Vian Vian9g00638 Chr9 7803875 7806707 +
Vifa Vifa6g03587 Chr6 1178265383 1178268961 +
Vifa Vifa4g00921 Chr4 267448879 267452806 -
Vimu Vimu11g04442 Chr11 65507603 65510752 -
Vimu Vimu9g00260 Chr9 3130259 3135514 +
Viun Viun3g00542 Chr3 3303219 3306676 +
Viun Viun10g01951 Chr10 34231110 34234357 -
Vivi Vivi5g05953 Chr5 163832415 163836479 -
Vivi Vivi7g04386 Chr7 113791740 113795981 +
Vra Vra11g0267 Chr11 1849647 1854555 +
Vvi Vvi2g0341 Chr2 2774777 2776263 +
Accr Accr5g00527 Chr5 26529410 26535610 +
Adu Adu03g04233 Chr03 131347590 131349218 +
Alju Alju03g0722 Chr03 31330051 31333445 +
Arst Arst3g05600 Chr3 130111464 130113445 +
Bach Bach11g00660 Chr11 5023276 5032126 -
Bisa Bisa07g0491 Chr07 12322929 12327013 -
Dere Dere02g2436 Chr02 26279775 26283482 +
Glsi Glsi11g2751 Chr11 20669275 20688018 +
Mepo Mepo2g03563 Chr2 45066214 45070150 +
Phac Phac2g03107 Chr2 32738238 32740388 -
Prci Prci3g0487 Chr3 6326109 6330843 +
Pste Pste3g03198 Chr3 24663028 24665516 -
Pte Pte2g00651 Chr2 5043450 5045439 -
Pte Pte19g00729 Chr19 5825320 5830253 -
Pvu Pvu2g2102 Chr2 36429157 36431813 -
Vian Vian1g02941 Chr1 48120093 48126477 -
Vifa Vifa1g10838 Chr1 1823487681 1823489994 +
Vimu Vimu11g01357 Chr11 15184283 15191918 +
Accr Accr5g00527 Chr5 26529410 26535610 +
Alju Alju03g0722 Chr03 31330051 31333445 +
Bisa Bisa07g0491 Chr07 12322929 12327013 -
Dere Dere02g2436 Chr02 26279775 26283482 +
Glsi Glsi11g2751 Chr11 20669275 20688018 +
Prci Prci3g0487 Chr3 6326109 6330843 +
Pte Pte19g00729 Chr19 5825320 5830253 -
Pte Pte2g00651 Chr2 5043450 5045439 -
Vifa Vifa1g10838 Chr1 1823487681 1823489994 +