Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi2g0322 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0323 . . . . . . . . . . . . . . . . . . . . . . . . . . Bva08g00001 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0324 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0325 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0326 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0327 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0328 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0329 . . . . . . . . . . . . . . Alju03g0700 . . . . . . . . . Bisa07g0502 . . . . . . . Dere02g2432 . . . . . Glsi11g2743 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco4g02347 . Prci3g0483 . . . . . . Pte19g00746 . . . . Pvu2g2105 . . . . . . . . . . . . . . . . . . . . . Vimu11g01352 . . . . . . .
Vvi2g0330 . . Accr5g00525 . Adu03g04232 . . . . . . . . . Alju03g0702 . . . . . . . . . Bisa07g0499 . . . . . . . Dere02g2433 . . . . . Glsi11g2745 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco4g02346 . Prci3g0484 . . . Pste3g03205 . . . . . . . Pvu2g2104 . . . . . . . . . . . . . . . . . Vian1g02943 . Vifa1g10836 . Vimu11g01354 . . . . . . .
Vvi2g0331 . . . . . . . . . . . . . . Alju03g0707 . . . . . Arst3g05599 . . . Bisa07g0495 . . . . . . . Dere02g2434 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mepo2g03557 . . . . . . . . . Phco4g02344 . Prci3g0485 . . . Pste3g03203 . . . . . Pumo6g01569 . Pvu2g2103 . . . . . Spst3g00316 . . . . . . . . . . . Vian1g02942 . Vifa1g10837 . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi2g0322 Chr2 2582738 2584091 -
Vvi Vvi2g0323 Chr2 2585841 2615288 -
Bva Bva08g00001 Chr08 3605 31502 -
Vvi Vvi2g0324 Chr2 2622891 2623454 +
Vvi Vvi2g0325 Chr2 2624684 2626283 -
Vvi Vvi2g0326 Chr2 2627669 2630862 +
Vvi Vvi2g0327 Chr2 2634798 2636564 +
Vvi Vvi2g0328 Chr2 2643819 2644363 +
Vvi Vvi2g0329 Chr2 2652811 2654415 -
Alju Alju03g0700 Chr03 30417690 30424449 +
Bisa Bisa07g0502 Chr07 12703871 12708765 -
Dere Dere02g2432 Chr02 26084420 26091298 +
Glsi Glsi11g2743 Chr11 20521678 20530954 +
Phco Phco4g02347 Chr4 44605418 44607512 -
Prci Prci3g0483 Chr3 6267154 6270673 +
Pte Pte19g00746 Chr19 5948842 5949791 -
Pvu Pvu2g2105 Chr2 36468883 36471341 -
Vimu Vimu11g01352 Chr11 15024684 15025150 +
Vvi Vvi2g0330 Chr2 2656233 2658528 -
Accr Accr5g00525 Chr5 26455533 26458966 +
Adu Adu03g04232 Chr03 131341621 131343392 +
Alju Alju03g0702 Chr03 30602504 30605700 -
Bisa Bisa07g0499 Chr07 12620690 12630465 -
Dere Dere02g2433 Chr02 26170729 26176598 +
Glsi Glsi11g2745 Chr11 20555528 20558819 +
Phco Phco4g02346 Chr4 44592359 44597217 -
Prci Prci3g0484 Chr3 6276412 6283849 -
Pste Pste3g03205 Chr3 24745471 24747587 -
Pvu Pvu2g2104 Chr2 36454138 36462937 -
Vian Vian1g02943 Chr1 48206297 48212223 -
Vifa Vifa1g10836 Chr1 1822548790 1822551522 +
Vimu Vimu11g01354 Chr11 15077771 15078184 +
Vvi Vvi2g0331 Chr2 2660400 2661822 -
Alju Alju03g0707 Chr03 30751350 30757415 +
Arst Arst3g05599 Chr3 130105610 130107686 +
Bisa Bisa07g0495 Chr07 12490994 12495788 -
Dere Dere02g2434 Chr02 26192317 26197268 +
Mepo Mepo2g03557 Chr2 45043737 45047928 +
Phco Phco4g02344 Chr4 44564115 44566370 -
Prci Prci3g0485 Chr3 6326108 6330843 +
Pste Pste3g03203 Chr3 24718708 24722078 +
Pumo Pumo6g01569 Chr6 22872939 22875395 -
Pvu Pvu2g2103 Chr2 36443430 36445904 +
Spst Spst3g00316 Chr3 5607412 5609613 -
Vian Vian1g02942 Chr1 48187325 48192084 +
Vifa Vifa1g10837 Chr1 1823154368 1823156352 +
Alju Alju03g0700 Chr03 30417690 30424449 +
Bisa Bisa07g0502 Chr07 12703871 12708765 -
Dere Dere02g2432 Chr02 26084420 26091298 +
Glsi Glsi11g2743 Chr11 20521678 20530954 +
Phco Phco4g02347 Chr4 44605418 44607512 -
Prci Prci3g0483 Chr3 6267154 6270673 +
Pte Pte19g00746 Chr19 5948842 5949791 -
Pvu Pvu2g2105 Chr2 36468883 36471341 -
Vimu Vimu11g01352 Chr11 15024684 15025150 +
Accr Accr5g00525 Chr5 26455533 26458966 +
Adu Adu03g04232 Chr03 131341621 131343392 +
Alju Alju03g0702 Chr03 30602504 30605700 -
Bisa Bisa07g0499 Chr07 12620690 12630465 -
Dere Dere02g2433 Chr02 26170729 26176598 +
Glsi Glsi11g2745 Chr11 20555528 20558819 +
Phco Phco4g02346 Chr4 44592359 44597217 -
Prci Prci3g0484 Chr3 6276412 6283849 -
Pste Pste3g03205 Chr3 24745471 24747587 -
Pvu Pvu2g2104 Chr2 36454138 36462937 -
Vian Vian1g02943 Chr1 48206297 48212223 -
Vifa Vifa1g10836 Chr1 1822548790 1822551522 +
Vimu Vimu11g01354 Chr11 15077771 15078184 +
Alju Alju03g0707 Chr03 30751350 30757415 +
Arst Arst3g05599 Chr3 130105610 130107686 +
Bisa Bisa07g0495 Chr07 12490994 12495788 -
Dere Dere02g2434 Chr02 26192317 26197268 +
Mepo Mepo2g03557 Chr2 45043737 45047928 +
Phco Phco4g02344 Chr4 44564115 44566370 -
Prci Prci3g0485 Chr3 6326108 6330843 +
Pste Pste3g03203 Chr3 24718708 24722078 +
Pumo Pumo6g01569 Chr6 22872939 22875395 -
Pvu Pvu2g2103 Chr2 36443430 36445904 +
Spst Spst3g00316 Chr3 5607412 5609613 -
Vian Vian1g02942 Chr1 48187325 48192084 +
Vifa Vifa1g10837 Chr1 1823154368 1823156352 +
Alju Alju03g0707 Chr03 30751350 30757415 +
Bisa Bisa07g0495 Chr07 12490994 12495788 -
Dere Dere02g2434 Chr02 26192317 26197268 +
Prci Prci3g0485 Chr3 6326108 6330843 +
Vifa Vifa1g10837 Chr1 1823154368 1823156352 +
Accr Accr5g00525 Chr5 26455533 26458966 +
Alju Alju03g0702 Chr03 30602504 30605700 -
Bisa Bisa07g0499 Chr07 12620690 12630465 -
Dere Dere02g2433 Chr02 26170729 26176598 +
Glsi Glsi11g2745 Chr11 20555528 20558819 +
Prci Prci3g0484 Chr3 6276412 6283849 -